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ParticipantEvidence.getAnnotations
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How to use
getAnnotations
method
in
psidev.psi.mi.jami.model.ParticipantEvidence

Best Java code snippets using psidev.psi.mi.jami.model.ParticipantEvidence.getAnnotations (Showing top 3 results out of 315)

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origin: uk.ac.ebi.intact.dataexchange.psimi/intact-jami-mitab

Collection<Annotation> exportAnnotations = new ArrayList<Annotation>(participant.getInteractor().getAnnotations());
exportAnnotations.removeAll(noExportAnnotations);
Collection<Annotation> noExportAnnotations2 = AnnotationUtils.collectAllAnnotationsHavingTopic(participant.getAnnotations(),
    null, "no-export");
Collection<Annotation> exportAnnotations2 = new ArrayList<Annotation>(participant.getAnnotations());
exportAnnotations2.removeAll(noExportAnnotations2);
origin: psidev.psi.mi.jami/jami-core

target.getAnnotations().clear();
target.getAnnotations().addAll(source.getAnnotations());
target.getConfidences().clear();
target.getConfidences().addAll(source.getConfidences());
origin: psidev.psi.mi/psimi-schema-validator

for (Annotation a : p.getAnnotations()){
  checkAnnotation(messages, a, p, "participant");
psidev.psi.mi.jami.modelParticipantEvidencegetAnnotations

Popular methods of ParticipantEvidence

  • getExperimentalRole
    The experimental role of the participant. It is a controlled vocabulary term and cannot be null. It
  • getIdentificationMethods
    The identification methods for this participant. Each identification method is a controlled vocabula
  • getConfidences
    The confidences for this participant. The Collection cannot be null. If the participant does not hav
  • getExpressedInOrganism
    The organisms in which the participant has been expressed. It can be null if not relevant or same as
  • getInteractor
  • getParameters
    Numerical parameters associated with this participant. The Collection cannot be null. If the partici
  • getAliases
  • getBiologicalRole
  • getExperimentalPreparations
    The experimental preparations for this participant. Each experimental preparation is a controlled vo
  • getFeatures
  • getInteraction
  • getXrefs
  • getInteraction,
  • getXrefs,
  • addFeature,
  • getCausalRelationships,
  • getStoichiometry,
  • setBiologicalRole,
  • setExperimentalRole,
  • setExpressedInOrganism,
  • setInteraction

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