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ParticipantEvidence.getExpressedInOrganism
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How to use
getExpressedInOrganism
method
in
psidev.psi.mi.jami.model.ParticipantEvidence

Best Java code snippets using psidev.psi.mi.jami.model.ParticipantEvidence.getExpressedInOrganism (Showing top 7 results out of 315)

origin: psidev.psi.mi.jami/jami-core

public void onExpressedInUpdate(T entity, Organism oldOrganism) {
  if (oldOrganism == null){
    experimentalEntityChangeLogger.log(Level.INFO, "The expressed in organism has been initialised for the experimental entity " + entity.toString());
  }
  else if (entity.getExpressedInOrganism() == null){
    experimentalEntityChangeLogger.log(Level.INFO, "The expressed in organism has been reset for the experimental entity " + entity.toString());
  }
  else {
    experimentalEntityChangeLogger.log(Level.INFO, "The expressed in organism " + oldOrganism + " has been updated with " + entity.getExpressedInOrganism() + " in the experimental entity " + entity.toString());
  }
}
origin: psidev.psi.mi.jami/jami-core

if (source != null && target != null){
  target.setExperimentalRole(source.getExperimentalRole());
  target.setExpressedInOrganism(source.getExpressedInOrganism());
  target.setBiologicalRole(source.getBiologicalRole());
  target.setStoichiometry(source.getStoichiometry());
origin: psidev.psi.mi.jami/jami-interactionviewer-json

if (object.getExpressedInOrganism() != null){
  MIJsonUtils.writeSeparator(getWriter());
  MIJsonUtils.writePropertyKey("expressedIn", getWriter());
  getHostOrganismWriter().write(object.getExpressedInOrganism());
origin: psidev.psi.mi.jami/jami-core

Organism organism1 = experimentalParticipant1.getExpressedInOrganism();
Organism organism2 = experimentalParticipant2.getExpressedInOrganism();
origin: psidev.psi.mi/psimi-schema-validator

if (p.getExpressedInOrganism() != null){
  checkOrganism(messages, p.getExpressedInOrganism(), p, "participant");
origin: psidev.psi.mi.jami/jami-core

Organism organism1 = experimentalParticipant1.getExpressedInOrganism();
Organism organism2 = experimentalParticipant2.getExpressedInOrganism();
origin: psidev.psi.mi.jami/jami-core

Organism organism1 = experimentalParticipant1.getExpressedInOrganism();
Organism organism2 = experimentalParticipant2.getExpressedInOrganism();
psidev.psi.mi.jami.modelParticipantEvidencegetExpressedInOrganism

Javadoc

The organisms in which the participant has been expressed. It can be null if not relevant or same as the original source organism of the interactor Ex: human-hela cells, ...

Popular methods of ParticipantEvidence

  • getExperimentalRole
    The experimental role of the participant. It is a controlled vocabulary term and cannot be null. It
  • getIdentificationMethods
    The identification methods for this participant. Each identification method is a controlled vocabula
  • getAnnotations
  • getConfidences
    The confidences for this participant. The Collection cannot be null. If the participant does not hav
  • getInteractor
  • getParameters
    Numerical parameters associated with this participant. The Collection cannot be null. If the partici
  • getAliases
  • getBiologicalRole
  • getExperimentalPreparations
    The experimental preparations for this participant. Each experimental preparation is a controlled vo
  • getFeatures
  • getInteraction
  • getXrefs
  • getInteraction,
  • getXrefs,
  • addFeature,
  • getCausalRelationships,
  • getStoichiometry,
  • setBiologicalRole,
  • setExperimentalRole,
  • setExpressedInOrganism,
  • setInteraction

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