public void onExpressedInUpdate(T entity, Organism oldOrganism) { if (oldOrganism == null){ experimentalEntityChangeLogger.log(Level.INFO, "The expressed in organism has been initialised for the experimental entity " + entity.toString()); } else if (entity.getExpressedInOrganism() == null){ experimentalEntityChangeLogger.log(Level.INFO, "The expressed in organism has been reset for the experimental entity " + entity.toString()); } else { experimentalEntityChangeLogger.log(Level.INFO, "The expressed in organism " + oldOrganism + " has been updated with " + entity.getExpressedInOrganism() + " in the experimental entity " + entity.toString()); } }
if (source != null && target != null){ target.setExperimentalRole(source.getExperimentalRole()); target.setExpressedInOrganism(source.getExpressedInOrganism()); target.setBiologicalRole(source.getBiologicalRole()); target.setStoichiometry(source.getStoichiometry());
if (object.getExpressedInOrganism() != null){ MIJsonUtils.writeSeparator(getWriter()); MIJsonUtils.writePropertyKey("expressedIn", getWriter()); getHostOrganismWriter().write(object.getExpressedInOrganism());
Organism organism1 = experimentalParticipant1.getExpressedInOrganism(); Organism organism2 = experimentalParticipant2.getExpressedInOrganism();
if (p.getExpressedInOrganism() != null){ checkOrganism(messages, p.getExpressedInOrganism(), p, "participant");
Organism organism1 = experimentalParticipant1.getExpressedInOrganism(); Organism organism2 = experimentalParticipant2.getExpressedInOrganism();
Organism organism1 = experimentalParticipant1.getExpressedInOrganism(); Organism organism2 = experimentalParticipant2.getExpressedInOrganism();