How to use
getExpressedInOrganism
method
in
psidev.psi.mi.jami.model.ParticipantEvidence

Best Java code snippets using psidev.psi.mi.jami.model.ParticipantEvidence.getExpressedInOrganism (Showing top 7 results out of 315)

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}

public void onExpressedInUpdate(T entity, Organism oldOrganism) {
  if (oldOrganism == null){
    experimentalEntityChangeLogger.log(Level.INFO, "The expressed in organism has been initialised for the experimental entity " + entity.toString());
  }
  else if (entity.getExpressedInOrganism() == null){
    experimentalEntityChangeLogger.log(Level.INFO, "The expressed in organism has been reset for the experimental entity " + entity.toString());
  }
  else {
    experimentalEntityChangeLogger.log(Level.INFO, "The expressed in organism " + oldOrganism + " has been updated with " + entity.getExpressedInOrganism() + " in the experimental entity " + entity.toString());
  }
}

if (source != null && target != null){
  target.setExperimentalRole(source.getExperimentalRole());
  target.setExpressedInOrganism(source.getExpressedInOrganism());
  target.setBiologicalRole(source.getBiologicalRole());
  target.setStoichiometry(source.getStoichiometry());

if (object.getExpressedInOrganism() != null){
  MIJsonUtils.writeSeparator(getWriter());
  MIJsonUtils.writePropertyKey("expressedIn", getWriter());
  getHostOrganismWriter().write(object.getExpressedInOrganism());

Organism organism1 = experimentalParticipant1.getExpressedInOrganism();
Organism organism2 = experimentalParticipant2.getExpressedInOrganism();

if (p.getExpressedInOrganism() != null){
  checkOrganism(messages, p.getExpressedInOrganism(), p, "participant");

Organism organism1 = experimentalParticipant1.getExpressedInOrganism();
Organism organism2 = experimentalParticipant2.getExpressedInOrganism();

Organism organism1 = experimentalParticipant1.getExpressedInOrganism();
Organism organism2 = experimentalParticipant2.getExpressedInOrganism();

Javadoc

The organisms in which the participant has been expressed. It can be null if not relevant or same as the original source organism of the interactor Ex: human-hela cells, ...

Popular methods of ParticipantEvidence

getExperimentalRole
The experimental role of the participant. It is a controlled vocabulary term and cannot be null. It
getIdentificationMethods
The identification methods for this participant. Each identification method is a controlled vocabula
getAnnotations
getConfidences
The confidences for this participant. The Collection cannot be null. If the participant does not hav
getInteractor
getParameters
Numerical parameters associated with this participant. The Collection cannot be null. If the partici
getAliases
getBiologicalRole
getExperimentalPreparations
The experimental preparations for this participant. Each experimental preparation is a controlled vo
getFeatures
getInteraction
getXrefs

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How to use getExpressedInOrganismmethodin psidev.psi.mi.jami.model.ParticipantEvidence

Best Java code snippets using psidev.psi.mi.jami.model.ParticipantEvidence.getExpressedInOrganism (Showing top 7 results out of 315)

How to use
getExpressedInOrganism
method
in
psidev.psi.mi.jami.model.ParticipantEvidence