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ParticipantEvidence.getInteractor
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How to use
getInteractor
method
in
psidev.psi.mi.jami.model.ParticipantEvidence

Best Java code snippets using psidev.psi.mi.jami.model.ParticipantEvidence.getInteractor (Showing top 6 results out of 315)

origin: psidev.psi.mi.jami/jami-core

String firstName = firstShortNameAlphabeticalOrder.getInteractor().getShortName().trim().toLowerCase();
String secondName = p.getInteractor().getShortName().trim().toLowerCase();
origin: uk.ac.ebi.intact.dataexchange.psimi/intact-jami-mitab

@Override
public void writeParticipantAnnotations(ParticipantEvidence participant) throws IOException {
  if (participant != null){
    Collection<Annotation> noExportAnnotations = AnnotationUtils.collectAllAnnotationsHavingTopic(participant.getInteractor().getAnnotations(),
        null, "no-export");
    Collection<Annotation> exportAnnotations = new ArrayList<Annotation>(participant.getInteractor().getAnnotations());
    exportAnnotations.removeAll(noExportAnnotations);
    Collection<Annotation> noExportAnnotations2 = AnnotationUtils.collectAllAnnotationsHavingTopic(participant.getAnnotations(),
origin: psidev.psi.mi.jami/jami-core

target.setParticipantA(first);
if (self){
  ParticipantEvidence clone = new DefaultParticipantEvidence(first.getInteractor());
  ParticipantCloner.copyAndOverrideParticipantEvidenceProperties(first, clone, true);
  clone.setInteraction(target);
ParticipantEvidence clone = new DefaultParticipantEvidence(first.getInteractor());
ParticipantCloner.copyAndOverrideParticipantEvidenceProperties(first, clone, true);
target.setParticipantA(clone);
  ParticipantEvidence clone2 = new DefaultParticipantEvidence(first.getInteractor());
  ParticipantCloner.copyAndOverrideParticipantEvidenceProperties(first, clone2, true);
  clone2.setInteraction(target);
  ParticipantEvidence clone2 = new DefaultParticipantEvidence(second.getInteractor());
  ParticipantCloner.copyAndOverrideParticipantEvidenceProperties(second, clone2, true);
  target.setParticipantB(clone2);
origin: psidev.psi.mi.jami/jami-core

target.setInteractor(source.getInteractor());
origin: psidev.psi.mi.jami/jami-core

ParticipantEvidence clone = new DefaultParticipantEvidence(p.getInteractor());
ParticipantCloner.copyAndOverrideParticipantEvidenceProperties(p, clone, true);
target.addParticipant(clone);
origin: psidev.psi.mi/psimi-schema-validator

if (p.getInteractor() != null && this.processObjects.add(p.getInteractor())){
  checkInteractor(messages, p.getInteractor());
psidev.psi.mi.jami.modelParticipantEvidencegetInteractor

Popular methods of ParticipantEvidence

  • getExperimentalRole
    The experimental role of the participant. It is a controlled vocabulary term and cannot be null. It
  • getIdentificationMethods
    The identification methods for this participant. Each identification method is a controlled vocabula
  • getAnnotations
  • getConfidences
    The confidences for this participant. The Collection cannot be null. If the participant does not hav
  • getExpressedInOrganism
    The organisms in which the participant has been expressed. It can be null if not relevant or same as
  • getParameters
    Numerical parameters associated with this participant. The Collection cannot be null. If the partici
  • getAliases
  • getBiologicalRole
  • getExperimentalPreparations
    The experimental preparations for this participant. Each experimental preparation is a controlled vo
  • getFeatures
  • getInteraction
  • getXrefs
  • getInteraction,
  • getXrefs,
  • addFeature,
  • getCausalRelationships,
  • getStoichiometry,
  • setBiologicalRole,
  • setExperimentalRole,
  • setExpressedInOrganism,
  • setInteraction

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