How to use
getInteractor
method
in
psidev.psi.mi.jami.model.ParticipantEvidence

Best Java code snippets using psidev.psi.mi.jami.model.ParticipantEvidence.getInteractor (Showing top 6 results out of 315)

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private void myMethod () {
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}

String firstName = firstShortNameAlphabeticalOrder.getInteractor().getShortName().trim().toLowerCase();
String secondName = p.getInteractor().getShortName().trim().toLowerCase();

@Override
public void writeParticipantAnnotations(ParticipantEvidence participant) throws IOException {
  if (participant != null){
    Collection<Annotation> noExportAnnotations = AnnotationUtils.collectAllAnnotationsHavingTopic(participant.getInteractor().getAnnotations(),
        null, "no-export");
    Collection<Annotation> exportAnnotations = new ArrayList<Annotation>(participant.getInteractor().getAnnotations());
    exportAnnotations.removeAll(noExportAnnotations);
    Collection<Annotation> noExportAnnotations2 = AnnotationUtils.collectAllAnnotationsHavingTopic(participant.getAnnotations(),

target.setParticipantA(first);
if (self){
  ParticipantEvidence clone = new DefaultParticipantEvidence(first.getInteractor());
  ParticipantCloner.copyAndOverrideParticipantEvidenceProperties(first, clone, true);
  clone.setInteraction(target);
ParticipantEvidence clone = new DefaultParticipantEvidence(first.getInteractor());
ParticipantCloner.copyAndOverrideParticipantEvidenceProperties(first, clone, true);
target.setParticipantA(clone);
  ParticipantEvidence clone2 = new DefaultParticipantEvidence(first.getInteractor());
  ParticipantCloner.copyAndOverrideParticipantEvidenceProperties(first, clone2, true);
  clone2.setInteraction(target);
  ParticipantEvidence clone2 = new DefaultParticipantEvidence(second.getInteractor());
  ParticipantCloner.copyAndOverrideParticipantEvidenceProperties(second, clone2, true);
  target.setParticipantB(clone2);

target.setInteractor(source.getInteractor());

ParticipantEvidence clone = new DefaultParticipantEvidence(p.getInteractor());
ParticipantCloner.copyAndOverrideParticipantEvidenceProperties(p, clone, true);
target.addParticipant(clone);

if (p.getInteractor() != null && this.processObjects.add(p.getInteractor())){
  checkInteractor(messages, p.getInteractor());

Popular methods of ParticipantEvidence

getExperimentalRole
The experimental role of the participant. It is a controlled vocabulary term and cannot be null. It
getIdentificationMethods
The identification methods for this participant. Each identification method is a controlled vocabula
getAnnotations
getConfidences
The confidences for this participant. The Collection cannot be null. If the participant does not hav
getExpressedInOrganism
The organisms in which the participant has been expressed. It can be null if not relevant or same as
getParameters
Numerical parameters associated with this participant. The Collection cannot be null. If the partici
getAliases
getBiologicalRole
getExperimentalPreparations
The experimental preparations for this participant. Each experimental preparation is a controlled vo
getFeatures
getInteraction
getXrefs

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How to use getInteractormethodin psidev.psi.mi.jami.model.ParticipantEvidence

Best Java code snippets using psidev.psi.mi.jami.model.ParticipantEvidence.getInteractor (Showing top 6 results out of 315)

How to use
getInteractor
method
in
psidev.psi.mi.jami.model.ParticipantEvidence