Public

The experimental role of the participant. It is a controlled vocabulary term and
cannot be null. It 

getExperimentalRole

The identification methods for this participant. Each identification method is a
controlled vocabula

getIdentificationMethods

getAnnotations

The confidences for this participant. The Collection cannot be null. If the
participant does not hav

getConfidences

The organisms in which the participant has been expressed. It can be null if not
relevant or same as

getExpressedInOrganism

getInteractor

Numerical parameters associated with this participant. The Collection cannot be
null. If the partici

getParameters

getAliases

getBiologicalRole

The experimental preparations for this participant. Each experimental
preparation is a controlled vo

getExperimentalPreparations

getFeatures

getInteraction

getXrefs

addFeature

getCausalRelationships

getStoichiometry

setBiologicalRole

Sets the experimental role. If expRole is null, it should create a unspecified
role (MI:0499)

setExperimentalRole

setExpressedInOrganism

setInteraction

List

Making http requests using okhttp

ObjectMapper provides functionality for reading and writing JSON, either to and
from basic POJOs (Pl

com.fasterxml.jackson.databind.ObjectMapper

java.net.Socket

java.nio.file.Path

Java representation of an SQL TIME value. Provides utilities to format and parse
the time's represen

java.sql.Time

 ResourceBundle is an abstract class which is the superclass of classes which
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/***
     * This method will copy properties of participant source in participant target and will override all the other properties of Target participant.
     * This method will ignore interaction
     * @param source
     * @param target
     * @param createNewFeature If true, this method will clone each feature from source instead of reusing the feature instances from source.
     *                         It will then set the participantEvidence of the cloned features to target
     */

// special case for participant candidates

/**
     * Use DefaultParticipantEvidenceComparator to know if two experimental participants are equals.
     * @param experimentalParticipant1
     * @param experimentalParticipant2
     * @return true if the two experimental participants are equal
     */

// both are experimental participant pools

// the experimental participant is before

// first compares basic participant properties

// then compares the participant identification method

// then compares the participant experimental preparations

// then compares the expressed in organisms

/**
     * Use DefaultExactParticipantEvidenceComparator to know if two experimental participants are equals.
     * @param experimentalParticipant1
     * @param experimentalParticipant2
     * @return true if the two experimental participants are equal
     */

/**
     * It will first compares experimental roles using AbstractCvTermComparator. If both experimental roles are equals, it
     * will look at the identification methods using AbstractCvTermComparator. If both identification methods are equals, it will
     * look at the experimental preparations using AbstractCvTermComparator. If both experimental preparations are equals, it will
     * look at the expressed in organisms using OrganismComparator.  If both organisms are the same, it will compare parameters using ParameterComparator
     *
     * @param experimentalParticipant1
     * @param experimentalParticipant2
     * @return
     */

How to use getFeaturesmethodin psidev.psi.mi.jami.model.ParticipantEvidence

Best Java code snippets using psidev.psi.mi.jami.model.ParticipantEvidence.getFeatures (Showing top 5 results out of 315)

How to use
getFeatures
method
in
psidev.psi.mi.jami.model.ParticipantEvidence