How to use

getInteraction

method

in

psidev.psi.mi.jami.model.ParticipantEvidence

/**
 * For each experiment associated with this interaction, collect all respective participants and their identification method and
 * check if the dependencies are correct.
 *
 * @param participant a participant to check on.
 * @return a collection of validator messages.
 *         if we fail to retreive the MI Ontology.
 */
public Collection<ValidatorMessage> check( ParticipantEvidence participant ) throws ValidatorException {
  Collection<ValidatorMessage> messages = Collections.EMPTY_LIST;
  if (participant.getInteraction() != null){
    InteractionEvidence interaction = participant.getInteraction();
    Experiment exp = interaction.getExperiment();
    if (exp != null){
      CvTerm detMethod = exp.getInteractionDetectionMethod();
      if (detMethod != null){
        if (!participant.getIdentificationMethods().isEmpty()){
          messages = new ArrayList<ValidatorMessage>(participant.getIdentificationMethods().size());
          for (CvTerm method : participant.getIdentificationMethods()){
            // build a context in case of error
            MiContext context = RuleUtils.buildContext(participant, "participant");
            context.addAssociatedContext(RuleUtils.buildContext(exp, "experiment"));
            messages.addAll( mapping.check( detMethod, method, context, this ) );
          }
        }
      }
    }
  }
  return messages;
}

/**
 * For each experiment associated with this interaction, collect all respective participants and their biological roles and
 * check if the dependencies are correct.
 *
 * @param participant a participant to check on.
 * @return a collection of validator messages.
 *         if we fail to retreive the MI Ontology.
 */
public Collection<ValidatorMessage> check( ParticipantEvidence participant ) throws ValidatorException {
  Collection<ValidatorMessage> messages = Collections.EMPTY_LIST;
  CvTerm biolRole = participant.getBiologicalRole();
  if (participant.getInteraction() != null){
    InteractionEvidence interaction = participant.getInteraction();
    Experiment exp = interaction.getExperiment();
    if (exp != null){
      CvTerm method = exp.getInteractionDetectionMethod();
      // build a context in case of error
      MiContext context = RuleUtils.buildContext(participant, "participant");
      context.addAssociatedContext(RuleUtils.buildContext(exp, "experiment"));
      messages=mapping.check( method, biolRole, context, this );
    }
  }
  return messages;
}

/**
 * For each experiment associated with this interaction, collect all respective participants and their experimental roles and
 * check if the dependencies are correct.
 *
 * @param participant a participant to check on.
 * @return a collection of validator messages.
 *         if we fail to retreive the MI Ontology.
 */
public Collection<ValidatorMessage> check( ParticipantEvidence participant ) throws ValidatorException {
  Collection<ValidatorMessage> messages = Collections.EMPTY_LIST;
  CvTerm role = participant.getExperimentalRole();
  if (participant.getInteraction() != null){
    InteractionEvidence interaction = participant.getInteraction();
    Experiment exp = interaction.getExperiment();
    if (exp != null){
      // build a context in case of error
      MiContext context = RuleUtils.buildContext(participant, "participant");
      context.addAssociatedContext(RuleUtils.buildContext(exp, "experiment"));
      final CvTerm method = exp.getInteractionDetectionMethod();
      messages=mapping.check( method, role, context, this );
    }
  }
  return messages;
}

else if (participant.getInteraction() != null){
  InteractionEvidence interaction = participant.getInteraction();
  if (interaction.getExperiment() != null){
    Experiment exp = interaction.getExperiment();