How to use
Experiment2xmlPSI1
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1.Experiment2xmlPSI1 (Showing top 9 results out of 315)

Add the Codota plugin to your IDE and get smart completions

private void myMethod () {
 LocalDateTime l =new LocalDateTime()
LocalDateTime.now()
DateTimeFormatter formatter;String text;formatter.parseLocalDateTime(text)
Smart code suggestions by Tabnine
}

element.setAttribute( "id", getExperimentId( experiment ) );
createNames( session, element, experiment );
Collection pubmedXrefs = createBibRef( session, element, experiment );
createExperimentXrefs( session, element, experiment, pubmedXrefs );
createConfidence( session, element, experiment );
  createAttributeList( session, element, experiment, attributeListFilter );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Experiment2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Experiment2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Experiment2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Experiment2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

element.setAttribute( "ref", getExperimentId( experiment ) );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Experiment2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Experiment2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Experiment2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Experiment2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

element.setAttribute( "ref", getExperimentId( experiment ) );

element.setAttribute( "id", getExperimentId( experiment ) );
createNames( session, element, experiment );
Collection pubmedXrefs = createBibRef( session, element, experiment );
createExperimentXrefs( session, element, experiment, pubmedXrefs );
createConfidence( session, element, experiment );
  createAttributeList( session, element, experiment, attributeListFilter );

  /**
   * Gives the right version of the Psi XML generator according to the user's session
   *
   * @param session the user session that will indicate which version of the Psi generator is required
   *
   * @return
   */
  public static Experiment2xmlI getInstance( UserSessionDownload session ) {

    if ( session.getPsiVersion().equals( PsiVersion.VERSION_1 ) ) {

      return Experiment2xmlPSI1.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_2 ) ) {

      return Experiment2xmlPSI2.getInstance();

    } else if ( session.getPsiVersion().equals( PsiVersion.VERSION_25 ) ) {

      return Experiment2xmlPSI25.getInstance();

    } else {

      throw new IllegalStateException( "We do not support PSI version " + session.getPsiVersion() );
    }
  }
}

element.setAttribute( "ref", getExperimentId( experiment ) );

element.setAttribute( "id", getExperimentId( experiment ) );
createNames( session, element, experiment );
Collection pubmedXrefs = createBibRef( session, element, experiment );
createExperimentXrefs( session, element, experiment, pubmedXrefs );
createConfidence( session, element, experiment );
  createAttributeList( session, element, experiment, attributeListFilter );

Javadoc

Process the common behaviour of an IntAct Experiment when exporting PSI version 1.

Most used methods

createAttributeList
createBibRef
generate the bibliographical reference of the Experiment out of the Xref having the CvDatabase pubme
createConfidence
createExperimentXrefs
Generate and add to the given element the Xrefs of the experiment (but no pubmed). The given set of
createNames
getExperimentId
get the value what will be used as ID of the experiment.
getInstance

Popular in Java

Reactive rest calls using spring rest template
putExtra (Intent)
onCreateOptionsMenu (Activity)
getOriginalFilename (MultipartFile)
Return the original filename in the client's filesystem.This may contain path information depending
URLConnection (java.net)
A connection to a URL for reading or writing. For HTTP connections, see HttpURLConnection for docume
ByteBuffer (java.nio)
A buffer for bytes. A byte buffer can be created in either one of the following ways: * #allocate
Permission (java.security)
Legacy security code; do not use.
Modifier (javassist)
The Modifier class provides static methods and constants to decode class and member access modifiers
SSLHandshakeException (javax.net.ssl)
The exception that is thrown when a handshake could not be completed successfully.
FileUtils (org.apache.commons.io)
General file manipulation utilities. Facilities are provided in the following areas: * writing to a
Sublime Text for Python

How to useExperiment2xmlPSI1 in uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1.Experiment2xmlPSI1 (Showing top 9 results out of 315)

How to use
Experiment2xmlPSI1
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1