Public

createAttributeList

generate the bibliographical reference of the Experiment out of the Xref having
the CvDatabase pubme

createBibRef

createConfidence

Generate and add to the given element the Xrefs of the experiment (but no
pubmed). 
The given set of

createExperimentXrefs

createNames

get the value what will be used as ID of the experiment.

getExperimentId

getInstance

LocalDateTime

Parsing JSON documents to java classes using gson

A Set is a data structure which does not allow duplicate elements.

java.util.Set

SortedSet is a Set which iterates over its elements in a sorted order. The order
is determined eithe

java.util.SortedSet

An ExecutorService that executes each submitted task using one of possibly
several pooled threads, n

java.util.concurrent.ThreadPoolExecutor

XPath provides access to the XPath evaluation environment and expressions.

Evaluation of XPath Expr

javax.xml.xpath.XPath

Central representation of an Ant project. This class defines an Ant project with
all of its targets,

org.apache.tools.ant.Project

Encapsulate an XML parse error or warning.> This module, both source code and documentation, is in t

org.xml.sax.SAXParseException

Return the original filename in the client's filesystem.This may contain path
information depending 

getOriginalFilename

findViewById

getSupportFragmentManager

/**
     * Generated an experimentDescription out of an IntAct Experiment.
     *
     * @param session
     * @param parent     the Element to which we will add the experimentDescription.
     * @param experiment the IntAct experiment that we convert to PSI.
     *
     * @return the generated experimentDescription Element.
     */

"You must give a non null UserSessionDownload."

"You must give a non null parent to build an experimentDescription."

"You must give a <experimentList> to build a "

"You must give a non null Experiment to build an experimentDescription."

//       names bibref xref hostOrganism interactionDetection participantDetection featureDetection confidence attributeList

// TODO what if no pubmed Xref ... no bibRef section ?

// 7. Generating OPTIONAL interactionDetection ... mapped to Experiment.CvInteraction.

// 8. Generating OPTIONAL participantDetection ... mapped to Experiment.CvIdentification.

// 9. Generating OPTIONAL featureDetection...

// actually, we have (so far) nothing like that in the IntAct Experiment object ... skip that tag.

// 12. Generating attributeList (if any)...

// 12. Attaching the newly created element to the parent...

How to use createBibRefmethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1.Experiment2xmlPSI1

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1.Experiment2xmlPSI1.createBibRef (Showing top 3 results out of 315)

How to use
createBibRef
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1.Experiment2xmlPSI1