Public

createAttributeList

generate the bibliographical reference of the Experiment out of the Xref having
the CvDatabase pubme

createBibRef

createConfidence

Generate and add to the given element the Xrefs of the experiment (but no
pubmed). 
The given set of

createExperimentXrefs

createNames

get the value what will be used as ID of the experiment.

getExperimentId

getInstance

LocalDateTime

Creating JSON documents from java classes using gson

A flow layout arranges components in a left-to-right flow, much like lines of
text in a paragraph. F

java.awt.FlowLayout

Allows reading from and writing to a file in a random-access manner. This is
different from the uni-

java.io.RandomAccessFile

 GregorianCalendar is a concrete subclass of Calendarand provides the standard
calendar used by most

java.util.GregorianCalendar

An ExecutorService that executes each submitted task using one of possibly
several pooled threads, n

java.util.concurrent.ThreadPoolExecutor

javax.imageio.ImageIO

javax.naming.Reference

putExtra

getSystemService

onRequestPermissionsResult

/**
     * Generated an experimentDescription out of an IntAct Experiment.
     *
     * @param session
     * @param parent     the Element to which we will add the experimentDescription.
     * @param experiment the IntAct experiment that we convert to PSI.
     *
     * @return the generated experimentDescription Element.
     */

"You must give a non null UserSessionDownload."

"You must give a non null parent to build an experimentDescription."

"You must give a <experimentList> to build a "

"You must give a non null Experiment to build an experimentDescription."

//       names bibref xref hostOrganism interactionDetection participantDetection featureDetection confidence attributeList

// TODO what if no pubmed Xref ... no bibRef section ?

// 7. Generating OPTIONAL interactionDetection ... mapped to Experiment.CvInteraction.

// 8. Generating OPTIONAL participantDetection ... mapped to Experiment.CvIdentification.

// 9. Generating OPTIONAL featureDetection...

// actually, we have (so far) nothing like that in the IntAct Experiment object ... skip that tag.

// 12. Generating attributeList (if any)...

// 12. Attaching the newly created element to the parent...

How to use createBibRefmethodin uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1.Experiment2xmlPSI1

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How to use
createBibRef
method
in
uk.ac.ebi.intact.application.dataConversion.psiDownload.xmlGenerator.psi1.Experiment2xmlPSI1