@Override protected void initVars(String id) throws FormatException, IOException { super.initVars(id); tiffReader = new MinimalTiffReader(); planes = new ArrayList<Plane>(); }
@Override public boolean isThisType(RandomAccessInputStream stream) throws IOException { if (tiffReader == null) tiffReader = new MinimalTiffReader(); return tiffReader.isThisType(stream); }
@Override protected void initVars(String id) throws FormatException, IOException { super.initVars(id); tiffReader = new MinimalTiffReader(); planes = new ArrayList<Plane>(); }
@Override public boolean isThisType(RandomAccessInputStream stream) throws IOException { if (tiffReader == null) tiffReader = new MinimalTiffReader(); return tiffReader.isThisType(stream); }
final WellInfo well = wells.get( wellIndex ); final AreaInfo area = well.areas.get( areaIndex ); final MinimalTiffReader tiffReader = new MinimalTiffReader();
final WellInfo well = wells.get( wellIndex ); final AreaInfo area = well.areas.get( areaIndex ); final MinimalTiffReader tiffReader = new MinimalTiffReader();
@Override public void initFile(String id) throws FormatException, IOException { super.initFile(id); tiffReader = new MinimalTiffReader(); positions = new Vector<Position>();
@Override public void initFile(String id) throws FormatException, IOException { super.initFile(id); tiffReader = new MinimalTiffReader(); positions = new Vector<Position>();
super.initStandardMetadata(); delegate = new MinimalTiffReader(); delegate.setId(currentId);
super.initStandardMetadata(); delegate = new MinimalTiffReader(); delegate.setId(currentId);
readers[i] = new MinimalTiffReader(); readers[i].setId(files[i]);
readers[i] = new MinimalTiffReader(); readers[i].setId(files[i]);
readers[i] = new MinimalTiffReader(); readers[i].setId(files[i]);
/** * @see loci.formats.IFormatReader#openBytes(int, byte[], int, int, int, int) */ @Override public byte[] openBytes(int no, byte[] buf, int x, int y, int w, int h) throws FormatException, IOException { FormatTools.checkPlaneParameters(this, no, buf.length, x, y, w, h); Arrays.fill(buf, (byte) 0); if (getSeries() < planes.length && no < planes[getSeries()].length) { Plane p = planes[getSeries()][no]; if (p != null && p.filename != null && new Location(p.filename).exists()) { if (reader == null) { reader = new MinimalTiffReader(); } reader.setId(p.filename); reader.openBytes(0, buf, x, y, w, h); reader.close(); } } return buf; }
/** * @see loci.formats.IFormatReader#openBytes(int, byte[], int, int, int, int) */ @Override public byte[] openBytes(int no, byte[] buf, int x, int y, int w, int h) throws FormatException, IOException { FormatTools.checkPlaneParameters(this, no, buf.length, x, y, w, h); Arrays.fill(buf, (byte) 0); if (getSeries() < planes.length && no < planes[getSeries()].length) { Plane p = planes[getSeries()][no]; if (p != null && p.filename != null && new Location(p.filename).exists()) { if (reader == null) { reader = new MinimalTiffReader(); } reader.setId(p.filename); reader.openBytes(0, buf, x, y, w, h); reader.close(); } } return buf; }
MinimalTiffReader r = new MinimalTiffReader(); r.setId(maskFile);
MinimalTiffReader r = new MinimalTiffReader(); r.setId(maskFile);
reader = new MinimalTiffReader(); return; reader = new MinimalTiffReader();
planes.clear(); reader = new MinimalTiffReader(); reader.setId(tmpPlanes[0].file); core = reader.getCoreMetadataList();
planes.clear(); reader = new MinimalTiffReader(); reader.setId(tmpPlanes[0].file); core = reader.getCoreMetadataList();