ms.sizeY = tileHeight * tileRows; ms.pixelType = readers[0][0].getPixelType(); ms.sizeC *= readers[0][0].getSizeC(); ms.rgb = readers[0][0].isRGB(); ms.littleEndian = readers[0][0].isLittleEndian();
ms.sizeY = tileHeight * tileRows; ms.pixelType = readers[0][0].getPixelType(); ms.sizeC *= readers[0][0].getSizeC(); ms.rgb = readers[0][0].isRGB(); ms.littleEndian = readers[0][0].isLittleEndian();
ms.sizeX = reader.getSizeX(); ms.sizeY = reader.getSizeY(); ms.sizeC *= reader.getSizeC(); ms.rgb = reader.isRGB(); ms.indexed = reader.isIndexed();
ms.sizeX = reader.getSizeX(); ms.sizeY = reader.getSizeY(); ms.sizeC *= reader.getSizeC(); ms.rgb = reader.isRGB(); ms.indexed = reader.isIndexed();
core.get(i).sizeZ = (m.maxZ - m.minZ) + 1; core.get(i).sizeT = (m.maxT - m.minT) + 1; core.get(i).sizeC = reader.getSizeC() * ((m.maxC - m.minC) + 1); core.get(i).imageCount = core.get(i).sizeZ * core.get(i).sizeT * (core.get(i).sizeC / reader.getSizeC()); reversePlaneLookup[i] = new int[core.get(i).imageCount]; Arrays.fill(reversePlaneLookup[i], -1); MinMax m = minMax.get(wellNumber); planeLengths[0] = core.get(p.series).sizeC / reader.getSizeC(); planeLengths[1] = core.get(p.series).sizeZ; planeLengths[2] = core.get(p.series).sizeT;
core.get(i).sizeZ = (m.maxZ - m.minZ) + 1; core.get(i).sizeT = (m.maxT - m.minT) + 1; core.get(i).sizeC = reader.getSizeC() * ((m.maxC - m.minC) + 1); core.get(i).imageCount = core.get(i).sizeZ * core.get(i).sizeT * (core.get(i).sizeC / reader.getSizeC()); reversePlaneLookup[i] = new int[core.get(i).imageCount]; Arrays.fill(reversePlaneLookup[i], -1); MinMax m = minMax.get(wellNumber); planeLengths[0] = core.get(p.series).sizeC / reader.getSizeC(); planeLengths[1] = core.get(p.series).sizeZ; planeLengths[2] = core.get(p.series).sizeT;
if (getSizeC() == 1 && !isIndexed()) core.get(i, 0).rgb = false; core.get(i, 0).dimensionOrder = "XYCZT"; core.get(i, 0).bitsPerPixel = firstIFD.getBitsPerSample()[0];
if (getSizeC() == 1 && !isIndexed()) core.get(i, 0).rgb = false; core.get(i, 0).dimensionOrder = "XYCZT"; core.get(i, 0).bitsPerPixel = firstIFD.getBitsPerSample()[0];