public Component createComponentPrey(Interaction interaction, Interactor interactor) { CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.PREY_PSI_REF, CvExperimentalRole.PREY); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentBait(Interaction interaction, Interactor interactor) { CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.BAIT_PSI_REF, CvExperimentalRole.BAIT); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentBait(Interaction interaction, Interactor interactor) { CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.BAIT_PSI_REF, CvExperimentalRole.BAIT); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentBait(Interaction interaction, Interactor interactor) { CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.BAIT_PSI_REF, CvExperimentalRole.BAIT); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentPrey(Interaction interaction, Interactor interactor) { CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.PREY_PSI_REF, CvExperimentalRole.PREY); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentPrey(Interaction interaction, Interactor interactor) { CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.PREY_PSI_REF, CvExperimentalRole.PREY); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentEnzymeTarget(Interactor interactor) { Interaction interaction = createInteractionDirect(); CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.ENZYME_TARGET_PSI_REF, CvExperimentalRole.ENZYME_TARGET); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentEnzymeTarget(Interactor interactor) { Interaction interaction = createInteractionDirect(); CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.ENZYME_TARGET_PSI_REF, CvExperimentalRole.ENZYME_TARGET); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentEnzyme(Interactor interactor) { Interaction interaction = createInteractionDirect(); CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.ENZYME_PSI_REF, CvExperimentalRole.ENZYME); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentEnzyme(Interactor interactor) { Interaction interaction = createInteractionDirect(); CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.ENZYME_PSI_REF, CvExperimentalRole.ENZYME); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); return createComponent(interaction, interactor, expRole, bioRole); }
public Component createComponentNeutral(Interaction interaction, Interactor interactor) { CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.NEUTRAL_PSI_REF, CvExperimentalRole.NEUTRAL); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); Component component = createComponent(interaction, interactor, expRole, bioRole); for (int i=0; i<childRandom(0,2); i++) { component.addBindingDomain(createFeatureRandom()); } return component; }
public Component createComponentNeutral(Interaction interaction, Interactor interactor) { CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.NEUTRAL_PSI_REF, CvExperimentalRole.NEUTRAL); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); Component component = createComponent(interaction, interactor, expRole, bioRole); for (int i=0; i<childRandom(0,2); i++) { component.addBindingDomain(createFeatureRandom()); } return component; }
public Component createComponentNeutral( Interactor interactor ) { CvInteractionType cvInteractionType = createCvObject(CvInteractionType.class, CvInteractionType.DIRECT_INTERACTION_MI_REF, CvInteractionType.DIRECT_INTERACTION); CvInteractorType intType = createCvObject(CvInteractorType.class, CvInteractorType.INTERACTION_MI_REF, CvInteractorType.INTERACTION ); CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.NEUTRAL_PSI_REF, CvExperimentalRole.NEUTRAL); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); Interaction interaction = new InteractionImpl(new ArrayList<Experiment>(Arrays.asList(createExperimentEmpty())), cvInteractionType, intType, nextString("label"), getInstitution()); Component component = createComponent(interaction, interactor, expRole, bioRole); for (int i=0; i<childRandom(0,2); i++) { component.addBindingDomain(createFeatureRandom()); } return component; }
public Component createComponentNeutral(Interaction interaction, Interactor interactor) { CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.NEUTRAL_PSI_REF, CvExperimentalRole.NEUTRAL); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); Component component = createComponent(interaction, interactor, expRole, bioRole); for (int i=0; i<childRandom(0,2); i++) { component.addBindingDomain(createFeatureRandom()); } return component; }
public Component createComponentNeutral( Interactor interactor ) { CvInteractionType cvInteractionType = createCvObject(CvInteractionType.class, CvInteractionType.DIRECT_INTERACTION_MI_REF, CvInteractionType.DIRECT_INTERACTION); CvInteractorType intType = createCvObject(CvInteractorType.class, CvInteractorType.INTERACTION_MI_REF, CvInteractorType.INTERACTION ); CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.NEUTRAL_PSI_REF, CvExperimentalRole.NEUTRAL); CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED); Interaction interaction = new InteractionImpl(new ArrayList<Experiment>(Arrays.asList(createExperimentEmpty())), cvInteractionType, intType, nextString("label"), getInstitution()); Component component = createComponent(interaction, interactor, expRole, bioRole); for (int i=0; i<childRandom(0,2); i++) { component.addBindingDomain(createFeatureRandom()); } return component; }