How to use uk.ac.ebi.intact.core.unit

public <X extends Xref> X createPrimaryReferenceXref(AnnotatedObject<X,?> parent, String primaryId) {
  CvXrefQualifier primaryReference = createCvObject(CvXrefQualifier.class, CvXrefQualifier.PRIMARY_REFERENCE_MI_REF, CvXrefQualifier.PRIMARY_REFERENCE);
  CvDatabase pubmedDb = createCvObject(CvDatabase.class, CvDatabase.PUBMED_MI_REF, CvDatabase.PUBMED);
  return createXref(parent, primaryId, primaryReference, pubmedDb);
}

public Component createComponentBait(Interaction interaction, Interactor interactor) {
  CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.BAIT_PSI_REF, CvExperimentalRole.BAIT);
  CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED);
  return createComponent(interaction, interactor, expRole, bioRole);
}

public Component createComponentEnzymeTarget(Interactor interactor) {
  Interaction interaction = createInteractionDirect();
  
  CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.ENZYME_TARGET_PSI_REF, CvExperimentalRole.ENZYME_TARGET);
  CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED);
  return createComponent(interaction, interactor, expRole, bioRole);
}

public Feature createFeatureRandom() {
  CvFeatureType cvFeatureType = createCvObject(CvFeatureType.class, CvFeatureType.EXPERIMENTAL_FEATURE_MI_REF, CvFeatureType.EXPERIMENTAL_FEATURE);
  return createFeature(nextString("feat"), cvFeatureType);
}

public Annotation createAnnotation(String annotationText, String cvTopicPrimaryId, String cvTopicShortLabel) {
  CvTopic cvTopic = createCvObject(CvTopic.class, cvTopicPrimaryId, cvTopicShortLabel);
  return createAnnotation(annotationText, cvTopic);
}

public Protein createProtein(String uniprotId, String shortLabel, String geneName, BioSource bioSource) {
  CvInteractorType intType = createCvObject(CvInteractorType.class, CvInteractorType.PROTEIN_MI_REF, CvInteractorType.PROTEIN);
  return createProtein(uniprotId, shortLabel, geneName, bioSource, intType );
}

public Component createComponentBait(Interactor interactor) {
  Interaction interaction = createInteractionDirect();
  return createComponentBait(interaction, interactor);
}

protected void commitTransaction() throws IntactTestException {
  if (getDataContext().isTransactionActive()) {
    try {
      getDataContext().commitTransaction();
    } catch (IntactTransactionException e) {
      throw new IntactTestException(e);
    }
  }
}

/**
 * Creates a schema and initialize the database
 */
public void createSchema() throws IntactTransactionException {
  createSchema(true);
}

public Component createComponentEnzyme(Interactor interactor) {
  Interaction interaction = createInteractionDirect();
  
  CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.ENZYME_PSI_REF, CvExperimentalRole.ENZYME);
  CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED);
  return createComponent(interaction, interactor, expRole, bioRole);
}

public Component createComponentBait(Interaction interaction, Interactor interactor) {
  CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.BAIT_PSI_REF, CvExperimentalRole.BAIT);
  CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED);
  return createComponent(interaction, interactor, expRole, bioRole);
}

public <X extends Xref> X createPrimaryReferenceXref(AnnotatedObject<X,?> parent, String primaryId) {
  CvXrefQualifier primaryReference = createCvObject(CvXrefQualifier.class, CvXrefQualifier.PRIMARY_REFERENCE_MI_REF, CvXrefQualifier.PRIMARY_REFERENCE);
  CvDatabase pubmedDb = createCvObject(CvDatabase.class, CvDatabase.PUBMED_MI_REF, CvDatabase.PUBMED);
  return createXref(parent, primaryId, primaryReference, pubmedDb);
}

public Annotation createAnnotation(String annotationText, String cvTopicPrimaryId, String cvTopicShortLabel) {
  CvTopic cvTopic = createCvObject(CvTopic.class, cvTopicPrimaryId, cvTopicShortLabel);
  return createAnnotation(annotationText, cvTopic);
}

public Component createComponentEnzymeTarget(Interactor interactor) {
  Interaction interaction = createInteractionDirect();
  
  CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.ENZYME_TARGET_PSI_REF, CvExperimentalRole.ENZYME_TARGET);
  CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED);
  return createComponent(interaction, interactor, expRole, bioRole);
}

public Component createComponentPrey(Interaction interaction, Interactor interactor) {
  CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.PREY_PSI_REF, CvExperimentalRole.PREY);
  CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED);
  return createComponent(interaction, interactor, expRole, bioRole);
}

public <X extends Xref> X createPrimaryReferenceXref(AnnotatedObject<X,?> parent, String primaryId) {
  CvXrefQualifier primaryReference = createCvObject(CvXrefQualifier.class, CvXrefQualifier.PRIMARY_REFERENCE_MI_REF, CvXrefQualifier.PRIMARY_REFERENCE);
  CvDatabase pubmedDb = createCvObject(CvDatabase.class, CvDatabase.PUBMED_MI_REF, CvDatabase.PUBMED);
  return createXref(parent, primaryId, primaryReference, pubmedDb);
}

public Component createComponentEnzyme(Interactor interactor) {
  Interaction interaction = createInteractionDirect();
  
  CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.ENZYME_PSI_REF, CvExperimentalRole.ENZYME);
  CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED);
  return createComponent(interaction, interactor, expRole, bioRole);
}

public Component createComponentBait(Interaction interaction, Interactor interactor) {
  CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.BAIT_PSI_REF, CvExperimentalRole.BAIT);
  CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED);
  return createComponent(interaction, interactor, expRole, bioRole);
}

public Component createComponentPrey(Interaction interaction, Interactor interactor) {
  CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.PREY_PSI_REF, CvExperimentalRole.PREY);
  CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED);
  return createComponent(interaction, interactor, expRole, bioRole);
}

public Component createComponentPrey(Interaction interaction, Interactor interactor) {
  CvExperimentalRole expRole = createCvObject(CvExperimentalRole.class, CvExperimentalRole.PREY_PSI_REF, CvExperimentalRole.PREY);
  CvBiologicalRole bioRole = createCvObject(CvBiologicalRole.class, CvBiologicalRole.UNSPECIFIED_PSI_REF, CvBiologicalRole.UNSPECIFIED);
  return createComponent(interaction, interactor, expRole, bioRole);
}