private String normalizeConciseAndFormalCharge(String conciseS, int formalCharge) { if (conciseS != null) { CMLAtomArray atomArray = createAndAddAtomArrayAndFormalChargeFromConcise(conciseS); if (atomArray != null) { atomArray.sort(Sort.CHFIRST); conciseS = atomArray.generateConcise(formalCharge); } } return conciseS; }
atomArray = atomArrays.get(0); atomArray.sort(Sort.CHFIRST); atomArray2Concise = atomArray.generateConcise(formalCharge);
String conciseS = atomArray.generateConcise(formalCharge); super.setConcise(conciseS);
.get(0).generateConcise((int) (this.getFormalCharge() * d)); super.setConcise(concise);