private void validateDisambiguatedOrg(OrganizationHolder organizationHolder) { if (organizationHolder.getOrganization() == null) { throw new InvalidOrgException(); } Organization org = organizationHolder.getOrganization(); if (org.getDisambiguatedOrganization() == null) { throw new InvalidDisambiguatedOrgException(); } if (org.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier() == null || org.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier().isEmpty()) { throw new InvalidDisambiguatedOrgException(); } }
private void validateDisambiguatedOrg(MultipleOrganizationHolder organizationHolder) { if (organizationHolder.getOrganization() == null) { throw new InvalidOrgException(); } for (Organization org : organizationHolder.getOrganization()){ if (org.getDisambiguatedOrganization() == null) { throw new InvalidDisambiguatedOrgException(); } if (org.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier() == null || org.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier().isEmpty()) { throw new InvalidDisambiguatedOrgException(); } } }
private SchemaOrgAffiliation createOrg(AffiliationGroup<? extends AffiliationSummary> e) { SchemaOrgAffiliation a = new SchemaOrgAffiliation(); a.name = e.getActivities().get(0).getOrganization().getName(); a.alternateName = e.getActivities().get(0).getDepartmentName(); for (AffiliationSummary summary : e.getActivities()) { if (summary.getOrganization().getDisambiguatedOrganization() !=null){ if (!StringUtils.isEmpty(summary.getOrganization().getDisambiguatedOrganization().getDisambiguationSource()) && !StringUtils.isEmpty(summary.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier())){ addIdToAffiliation(summary.getOrganization().getDisambiguatedOrganization().getDisambiguationSource(), summary.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier(), a); } if (summary.getOrganization().getDisambiguatedOrganization().getExternalIdentifiers() != null) for (DisambiguatedOrganizationExternalIdentifier i : summary.getOrganization().getDisambiguatedOrganization().getExternalIdentifiers()) { addIdToAffiliation(i.getIdentifierType(),i.getIdentifier(), a); } } } return a; }
public static Org valueOf(Organization organization) { Org org = new Org(); org.setName(organization.getName()); org.setCity(organization.getAddress().getCity()); org.setRegion(organization.getAddress().getRegion()); org.setCountry(organization.getAddress().getCountry().name()); if (organization.getDisambiguatedOrganization() != null) { org.setDisambiguationSource(organization.getDisambiguatedOrganization().getDisambiguationSource()); org.setOrgDisambiguatedId(String.valueOf(organization.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier())); } return org; }
private OrgEntity getOrgEntity(org.orcid.jaxb.model.v3.rc2.common.Organization organization){ OrgEntity orgEntity = new OrgEntity(); orgEntity.setName(organization.getName()); org.orcid.jaxb.model.v3.rc2.common.OrganizationAddress address = organization.getAddress(); orgEntity.setCity(address.getCity()); orgEntity.setRegion(address.getRegion()); orgEntity.setCountry(address.getCountry().name()); if (organization.getDisambiguatedOrganization() != null && organization.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier() != null) { // if disambiguated org is present (must be for v3 API, but not UI) it must be valid OrgDisambiguatedEntity disambiguatedOrg = orgDisambiguatedDao.findBySourceIdAndSourceType(organization.getDisambiguatedOrganization() .getDisambiguatedOrganizationIdentifier(), organization.getDisambiguatedOrganization().getDisambiguationSource()); if (disambiguatedOrg == null) { throw new InvalidDisambiguatedOrgException(); } orgEntity.setOrgDisambiguated(disambiguatedOrg); } return matchOrCreateOrg(orgEntity); }
private SchemaOrgAffiliation createFundingOrg(FundingGroup fundingGroup) { SchemaOrgAffiliation a = new SchemaOrgAffiliation(); a.name = fundingGroup.getFundingSummary().get(0).getOrganization().getName(); a.alternateName = fundingGroup.getFundingSummary().get(0).getTitle().getTitle().getContent(); //add org ids for (FundingSummary s : fundingGroup.getFundingSummary()){ if (s.getOrganization().getDisambiguatedOrganization() !=null){ if (!StringUtils.isEmpty(s.getOrganization().getDisambiguatedOrganization().getDisambiguationSource()) && !StringUtils.isEmpty(s.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier())) addIdToAffiliation(s.getOrganization().getDisambiguatedOrganization().getDisambiguationSource(),s.getOrganization().getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier(), a); if (s.getOrganization().getDisambiguatedOrganization().getExternalIdentifiers() != null) for (DisambiguatedOrganizationExternalIdentifier i : s.getOrganization().getDisambiguatedOrganization().getExternalIdentifiers()) { addIdToAffiliation(i.getIdentifierType(),i.getIdentifier(), a); } } } //add grant ids if (fundingGroup.getIdentifiers() != null && fundingGroup.getIdentifiers().getExternalIdentifier() != null) for (ExternalID id : fundingGroup.getIdentifiers().getExternalIdentifier()) a.identifier.add(new SchemaOrgExternalID(id.getType(), norm.normalise(id.getType(), id.getValue()))); return a; }
alumniOf.addAll(r.getActivitiesSummary().getQualifications().retrieveGroups()); for (AffiliationGroup<? extends AffiliationSummary> e : alumniOf) { if (e.getActivities().get(0).getOrganization() != null && e.getActivities().get(0).getOrganization().getDisambiguatedOrganization() != null) doc.alumniOf.add(createOrg(e)); affiliationGroups.addAll(r.getActivitiesSummary().getServices().retrieveGroups()); for (AffiliationGroup<? extends AffiliationSummary> a: affiliationGroups) { if (a.getActivities().get(0).getOrganization() != null && a.getActivities().get(0).getOrganization().getDisambiguatedOrganization() != null) doc.affiliation.add(createOrg(a)); && e.getFundingSummary().get(0).getOrganization().getDisambiguatedOrganization() != null) { doc.worksAndFunding.funder.add(createFundingOrg(e));
organization.getDisambiguatedOrganization().setDisambiguatedOrganizationIdentifier(disambiguatedAffiliationSourceId.getValue()); organization.getDisambiguatedOrganization().setDisambiguationSource(disambiguationSource.getValue());
OrganizationAddress address = organization.getAddress(); form.setCity(Text.valueOf(address.getCity())); if (organization.getDisambiguatedOrganization() != null) { if (organization.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier() != null) { form.setDisambiguatedAffiliationSourceId(Text.valueOf(organization.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier())); form.setDisambiguationSource(Text.valueOf(organization.getDisambiguatedOrganization().getDisambiguationSource())); form.setOrgDisambiguatedId(Text.valueOf(String.valueOf(organization.getDisambiguatedOrganization().getId())));
OrganizationAddress address = organization.getAddress(); form.setCity(Text.valueOf(address.getCity())); if (organization.getDisambiguatedOrganization() != null) { if (organization.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier() != null) { form.setDisambiguatedAffiliationSourceId(Text.valueOf(organization.getDisambiguatedOrganization().getDisambiguatedOrganizationIdentifier())); form.setDisambiguationSource(Text.valueOf(organization.getDisambiguatedOrganization().getDisambiguationSource())); form.setOrgDisambiguatedId(Text.valueOf(String.valueOf(organization.getDisambiguatedOrganization().getId())));
organization.getDisambiguatedOrganization().setDisambiguatedOrganizationIdentifier(disambiguatedFundingSourceId.getValue()); organization.getDisambiguatedOrganization().setDisambiguationSource(disambiguationSource.getValue());
DisambiguatedOrganization disambiguatedOrganization = organization.getDisambiguatedOrganization(); if (disambiguatedOrganization != null) { if (StringUtils.isNotEmpty(disambiguatedOrganization.getDisambiguatedOrganizationIdentifier())) {
DisambiguatedOrganization disambiguatedOrganization = organization.getDisambiguatedOrganization(); if (disambiguatedOrganization != null) { if (StringUtils.isNotEmpty(disambiguatedOrganization.getDisambiguatedOrganizationIdentifier())) {