private static boolean testBasicSymmetricalDistanceMatrix() { try { final DistanceMatrix matrix_0 = new BasicSymmetricalDistanceMatrix( 4 ); matrix_0.setIdentifier( 0, "A" ); matrix_0.setIdentifier( 1, "B" ); matrix_0.setIdentifier( 2, "C" ); matrix_0.setIdentifier( 3, "0123456789012" ); matrix_0.setValue( 1, 0, 0.00001 ); matrix_0.setValue( 0, 2, 0.0000009 );
DM.setIdentifier(i, msa.getAlignedSequence(i + 1).getAccession() .getID());
logger.info("{}:{}", "Determining Distances", (loopcount * 100) / totalloopcount); distance.setIdentifier(i, msa.getAlignedSequence(i + 1) .getAccession().getID());
DM.setIdentifier(i, msa.getAlignedSequence(i + 1).getAccession() .getID());
DM.setIdentifier(i, msa.getAlignedSequence(i + 1).getAccession() .getID());
logger.info("{}:{}", "Determining Distances", (loopcount * 100) / totalloopcount); distance.setIdentifier(i, msa.getAlignedSequence(i + 1) .getAccession().getID());
logger.info("{}:{}", "Determining Distances", (loopcount * 100) / totalloopcount); distance.setIdentifier(i, msa.getAlignedSequence(i + 1) .getAccession().getID());
distance_matrix.setIdentifier( row, table.getValue( 0, row + start_row ) ); switch ( getInputMatrixType() ) { case LOWER_TRIANGLE: