return new BigWigIterator(); BigWigIterator wigIterator = new BigWigIterator(fis, chromosomeIDTree, chromosomeDataTree, selectionRegion, contained);
return new BigWigIterator(); BigWigIterator wigIterator = new BigWigIterator(fis, chromosomeIDTree, chromosomeDataTree, selectionRegion, contained);
return new BigWigIterator(); BigWigIterator wigIterator = new BigWigIterator(fis, chromosomeIDTree, chromosomeDataTree, selectionRegion, contained);
/** * Returns an iterator for BigWig values for all chromosome regions. * <p/> * Note: the BBFile type should be BigWig; else a null iterator is returned. * <p/> * Returns: * Iterator to provide BedFeature(s) for all chromosome regions. * Error conditions: * 1) An empty iterator is returned if region has no data available * 2) A null object is returned if the file is not BigWig.(see isBigWigFile method) */ public BigWigIterator getBigWigIterator() { if (!isBigWigFile()) return null; // get all regions bounds RPChromosomeRegion selectionRegion = chromosomeDataTree.getChromosomeBounds(); // compose an iterator boolean contained = true; // all regions are contained BigWigIterator wigIterator = new BigWigIterator(fis, chromosomeIDTree, chromosomeDataTree, selectionRegion, contained); return wigIterator; }
/** * Returns an iterator for BigWig values for all chromosome regions. * <p/> * Note: the BBFile type should be BigWig; else a null iterator is returned. * <p/> * Returns: * Iterator to provide BedFeature(s) for all chromosome regions. * Error conditions: * 1) An empty iterator is returned if region has no data available * 2) A null object is returned if the file is not BigWig.(see isBigWigFile method) */ public BigWigIterator getBigWigIterator() { if (!isBigWigFile()) return null; // get all regions bounds RPChromosomeRegion selectionRegion = chromosomeDataTree.getChromosomeBounds(); // compose an iterator boolean contained = true; // all regions are contained BigWigIterator wigIterator = new BigWigIterator(fis, chromosomeIDTree, chromosomeDataTree, selectionRegion, contained); return wigIterator; }