- getAtomGroups
Return a List of all (observed) Groups of a special type, one of:
GroupType#AMINOACID, GroupType#HET
- getId
Get the 'private' asymId (internal chain IDs in mmCif) for this chain.
- getStructure
Returns the parent Structure of this chain.
- addGroup
add a group to the list of ATOM record group of this chain. To add SEQRES
records a more complex ali
- getAtomLength
Returns the number of Groups with observed density in the chain, i.e. those with
coordinates in ATOM
- getChainID
Gets the 'private' asymId of this chain.
- getGroupByPDB
Get a group by its PDB residue numbering. If the PDB residue number is not
known, throws a Structure
- getSeqResGroups
Returns a List of all SEQRES groups of a special type, one of:
GroupType#AMINOACID, GroupType#HETATM
- setId
Set the 'private' asymId (internal chain IDs in mmCif) for this chain.
- clone
returns an identical copy of this Chain.
- getAtomGroup
Return the Group at given position, from within Groups with observed density in
the chain, i.e. thos
- getAtomSequence
Returns the sequence of amino acids as it has been provided in the ATOM records.
Non-standard residu