public int getWellCount(int plateIndex) { // Parents: {u'Plate': {u'OME': None}} // Well is not a reference return root.getPlate(plateIndex).sizeOfWellList(); }
public int getWellCount(int plateIndex) { // Parents: {u'Plate': {u'OME': None}} // Well is not a reference return root.getPlate(plateIndex).sizeOfWellList(); }
@Test (groups = {"11-06-u-spw"}, dependsOnMethods = {"testPlate0"}) public void testPlate0Well0() { Assert.assertNotNull(plate0); Assert.assertEquals(1, plate0.sizeOfWellList()); well0 = plate0.getWell(0); Assert.assertNotNull(well0); Assert.assertEquals(ref.Plate0Well0Column, well0.getColumn()); Assert.assertEquals(ref.Plate0Well0Row, well0.getRow()); Assert.assertEquals(ref.Plate0Well0Color, well0.getColor()); Assert.assertEquals(ref.Plate0Well0Status, well0.getType()); } @Test (groups = {"11-06-u-spw"}, dependsOnMethods = {"testPlate0Well0"})
public void setWellType(String type, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // Type is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); o2.setType(type); }
public void setWellExternalDescription(String externalDescription, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // ExternalDescription is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); o2.setExternalDescription(externalDescription); }
public void setWellRow(NonNegativeInteger row, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // Row is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); o2.setRow(row); }
public void setWellColumn(NonNegativeInteger column, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // Column is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); o2.setColumn(column); }
public void setWellColor(Color color, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // Color is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); o2.setColor(color); }
public void setWellColor(Color color, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // Color is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); o2.setColor(color); }
public void setWellRow(NonNegativeInteger row, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // Row is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); o2.setRow(row); }
public void setWellType(String type, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // Type is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); o2.setType(type); }
public void setWellExternalDescription(String externalDescription, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // ExternalDescription is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); o2.setExternalDescription(externalDescription); }
public void setWellExternalIdentifier(String externalIdentifier, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // ExternalIdentifier is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); o2.setExternalIdentifier(externalIdentifier); }
public void setWellColumn(NonNegativeInteger column, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // Column is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); o2.setColumn(column); }
public void setWellExternalIdentifier(String externalIdentifier, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // ExternalIdentifier is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); o2.setExternalIdentifier(externalIdentifier); }
public void setWellID(String id, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // ID is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); model.addModelObject(id, o2); o2.setID(id); }
public void setWellID(String id, int plateIndex, int wellIndex) { // Parents: {u'Plate': {u'OME': None}} // ID is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); model.addModelObject(id, o2); o2.setID(id); }
public void setWellSamplePositionY(Length positionY, int plateIndex, int wellIndex, int wellSampleIndex) { // Parents: {u'Well': {u'Plate': {u'OME': None}}} // PositionY is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); if (o2.sizeOfWellSampleList() == wellSampleIndex) { o2.addWellSample(new WellSample()); } WellSample o3 = o2.getWellSample(wellSampleIndex); o3.setPositionY(positionY); }
public void setWellSamplePositionY(Length positionY, int plateIndex, int wellIndex, int wellSampleIndex) { // Parents: {u'Well': {u'Plate': {u'OME': None}}} // PositionY is not a reference OME o0 = root; if (o0.sizeOfPlateList() == plateIndex) { o0.addPlate(new Plate()); } Plate o1 = o0.getPlate(plateIndex); if (o1.sizeOfWellList() == wellIndex) { o1.addWell(new Well()); } Well o2 = o1.getWell(wellIndex); if (o2.sizeOfWellSampleList() == wellSampleIndex) { o2.addWellSample(new WellSample()); } WellSample o3 = o2.getWellSample(wellSampleIndex); o3.setPositionY(positionY); }
@Test(dependsOnMethods={"testValidOMENode"}) public void testValidPlateNode() { Plate plate = ome.getPlate(0); assertNotNull(plate); assertEquals(PLATE_ID, plate.getID()); assertEquals(plate.getRows(), WELL_ROWS); assertEquals(plate.getColumns(), WELL_COLS); assertEquals(plate.getRowNamingConvention(), WELL_ROW); assertEquals(plate.getColumnNamingConvention(), WELL_COL); assertEquals(plate.sizeOfWellList(), WELL_ROWS.getValue() * WELL_COLS.getValue()); for (Integer row=0; row<WELL_ROWS.getValue(); row++) { for (Integer col=0; col<WELL_COLS.getValue(); col++) { Well well = plate.getWell(row * WELL_COLS.getValue() + col); assertNotNull(well); assertEquals(String.format("Well:%d_%d", row, col), well.getID()); assertEquals(well.getRow(), row); assertEquals(well.getColumn(), col); } } }