public OMEXMLMetadata getOmeXmlMetadata() { if (omeXmlMetadata == null) { try { omeXmlMetadata = getOmeXmlService().createOMEXMLMetadata(); } catch (ServiceException exc) { LOGGER.error("Could not create OME-XML metadata", exc); } } return omeXmlMetadata; }
public OMEXMLMetadata getOmeXmlMetadata() { if (omeXmlMetadata == null) { try { omeXmlMetadata = getOmeXmlService().createOMEXMLMetadata(); } catch (ServiceException exc) { LOGGER.error("Could not create OME-XML metadata", exc); } } return omeXmlMetadata; }
private int populateSPW(MetadataStore store, int screens, int plates, int rows, int cols, int fields, int acqs, boolean withMicrobeam) { final XMLMockObjects xml = new XMLMockObjects(); OME ome = null; if (screens==0) { ome = xml.createPopulatedPlate(plates, rows, cols, fields, acqs, withMicrobeam); } else { ome = xml.createPopulatedScreen(screens, plates, rows, cols, fields, acqs, withMicrobeam); } if (withMicrobeam) roiCount = roiCount + plates;; getOmeXmlMetadata().setRoot(new OMEXMLMetadataRoot(ome)); // copy populated SPW metadata into destination MetadataStore getOmeXmlService().convertMetadata(omeXmlMetadata, store); domains = new String[] {FormatTools.HCS_DOMAIN}; return ome.sizeOfImageList(); }
private int populateSPW(MetadataStore store, int screens, int plates, int rows, int cols, int fields, int acqs, boolean withMicrobeam) { final XMLMockObjects xml = new XMLMockObjects(); OME ome = null; if (screens==0) { ome = xml.createPopulatedPlate(plates, rows, cols, fields, acqs, withMicrobeam); } else { ome = xml.createPopulatedScreen(screens, plates, rows, cols, fields, acqs, withMicrobeam); } if (withMicrobeam) roiCount = roiCount + plates;; getOmeXmlMetadata().setRoot(new OMEXMLMetadataRoot(ome)); // copy populated SPW metadata into destination MetadataStore getOmeXmlService().convertMetadata(omeXmlMetadata, store); domains = new String[] {FormatTools.HCS_DOMAIN}; return ome.sizeOfImageList(); }