/** * Retrieves an {@link ome.xml.model.enums.ExperimentType} enumeration * value for the given String. * * @throws ome.xml.model.enums.EnumerationException if an appropriate * enumeration value is not found. * @deprecated Use {@link MetadataTools#getExperimentType(String)}. */ @Deprecated protected ExperimentType getExperimentType(String value) throws FormatException { return MetadataTools.getExperimentType(value); } /**
/** * Retrieves an {@link ome.xml.model.enums.ExperimentType} enumeration * value for the given String. * * @throws ome.xml.model.enums.EnumerationException if an appropriate * enumeration value is not found. * @deprecated Use {@link MetadataTools#getExperimentType(String)}. */ @Deprecated protected ExperimentType getExperimentType(String value) throws FormatException { return MetadataTools.getExperimentType(value); } /**
try { store.setExperimentType( MetadataTools.getExperimentType(attributes.getValue("type")), 0);
try { store.setExperimentType( MetadataTools.getExperimentType(attributes.getValue("type")), 0);
private void populateMetadataStore() throws FormatException { MetadataStore store = makeFilterMetadata(); MetadataTools.populatePixels(store, this, true); for (int i=0; i<getSeriesCount(); i++) { // populate Image data if (i < imageNames.size()) { store.setImageName(imageNames.get(i), i); } String date = i < dates.size() ? dates.get(i) : ""; if (date != null && !date.equals("")) { store.setImageAcquisitionDate(new Timestamp(date), i); } } if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { for (int i=0; i<getSeriesCount(); i++) { // populate PlaneTiming data for (int q=0; q<core.get(i).imageCount; q++) { if (exposureTimes.get(i) != null) { store.setPlaneExposureTime(new Time(exposureTimes.get(i), UNITS.SECOND), i, q); } } // populate Experiment data if (i < types.size()) { store.setExperimentID(MetadataTools.createLSID("Experiment", i), i); store.setExperimentType(MetadataTools.getExperimentType(types.get(i)), i); } } } }
private void populateMetadataStore() throws FormatException { MetadataStore store = makeFilterMetadata(); MetadataTools.populatePixels(store, this, true); for (int i=0; i<getSeriesCount(); i++) { // populate Image data if (i < imageNames.size()) { store.setImageName(imageNames.get(i), i); } String date = i < dates.size() ? dates.get(i) : ""; if (date != null && !date.equals("")) { store.setImageAcquisitionDate(new Timestamp(date), i); } } if (getMetadataOptions().getMetadataLevel() != MetadataLevel.MINIMUM) { for (int i=0; i<getSeriesCount(); i++) { // populate PlaneTiming data for (int q=0; q<core.get(i).imageCount; q++) { if (exposureTimes.get(i) != null) { store.setPlaneExposureTime(new Time(exposureTimes.get(i), UNITS.SECOND), i, q); } } // populate Experiment data if (i < types.size()) { store.setExperimentID(MetadataTools.createLSID("Experiment", i), i); store.setExperimentType(MetadataTools.getExperimentType(types.get(i)), i); } } } }
store.setExperimentType(MetadataTools.getExperimentType(experimentType), 0);
store.setExperimentType(MetadataTools.getExperimentType(experimentType), 0);
String experimentID = MetadataTools.createLSID("Experiment", 0); store.setExperimentID(experimentID, 0); store.setExperimentType(MetadataTools.getExperimentType("Other"), 0); store.setExperimentDescription(experiment.getName(), 0);
String experimentID = MetadataTools.createLSID("Experiment", 0); store.setExperimentID(experimentID, 0); store.setExperimentType(MetadataTools.getExperimentType("Other"), 0); store.setExperimentDescription(experiment.getName(), 0);
MetadataTools.createLSID("Experiment", 0); store.setExperimentID(experimentID, 0); store.setExperimentType(MetadataTools.getExperimentType(values[2]), 0); break; case 21:
MetadataTools.createLSID("Experiment", 0); store.setExperimentID(experimentID, 0); store.setExperimentType(MetadataTools.getExperimentType(values[2]), 0); break; case 21: