public static void main( final String[] args ) { ImageJ.main( args ); new ManualTrackingPlugIn_().run( "samples/Merged.tif" ); } }
public static void main( final String[] args ) { ImageJ.main( args ); new BigDataBrowserPlugIn().run(); } }
public static void main( final String[] args ) { ImageJ.main( args ); new TrackMatePlugIn_().run( "samples/FakeTracks.tif" ); }
public static void main( final String[] args ) { ImageJ.main( args ); new OpenImarisPlugIn().run(); } @Override
public static void main( final String[] args ) { ImageJ.main( args ); new TrackMatePlugIn_().run( "samples/FakeTracks.tif" ); }
public static void main( final String[] args ) { ImageJ.main( args ); final LoadTrackMatePlugIn_ plugIn = new LoadTrackMatePlugIn_(); plugIn.run( "samples/FakeTracks.xml" ); }
public static void main( final String[] args ) { ImageJ.main( args ); new ManualTrackingPlugIn_().run( "samples/Merged.tif" ); } }
public static void main( final String[] args ) { ImageJ.main( args ); final ExportCellVoyagerPlugIn plugin = new ExportCellVoyagerPlugIn(); final File file = new File( "/Users/tinevez/Desktop/Data/1_7_6_1_2/20130703T145244/" ); plugin.setSourcePath( file.getAbsolutePath() ); plugin.run(); } }
public static void main( final String[] args ) { ImageJ.main( args ); final LoadTrackMatePlugIn_ plugIn = new LoadTrackMatePlugIn_(); plugIn.run( "samples/FakeTracks.xml" ); }
public static void main( final String[] args ) { ImageJ.main( args ); new TrackMateRunner_().run( "use_gui=false " + "save_to=[/Users/tinevez/Desktop/TrackMateSaveTest.xml] " + "export_to=[/Users/tinevez/Desktop/TrackMateExportTest.xml] " + "image_path=[samples/FakeTracks.tif] " + "display_results=true " + "radius=2.5 " + "threshold=50.1 " + "subpixel=false " + "median=false " + "channel=1 " + "max_frame_gap=0 " + "paf!=pif!" ); }
/** * Main method to test and debug the watershed * * @param args */ public static void main( final String[] args ) { ImageJ.main( args ); IJ.open( Watershed2DTest.class.getResource( "/files/grains.tif" ).getFile() ); new Watershed3DPlugin().run( null ); }
public static < T extends NativeType< T > & RealType< T >> void main( final String[] args ) { ImageJ.main( args ); new RadiusEstimatorTest< T >().exampleEstimation(); } }
public static void main(String[] args) { ImageJ.main(args); LoadTrackMatePlugIn_ plugin = new LoadTrackMatePlugIn_(); plugin.run(null); // launch the GUI; } }
/** * Main method to test and debug the Morphological * Segmentation GUI * * @param args */ public static void main( final String[] args ) { ImageJ.main( args ); IJ.open( MorphologicalSegmentationTest.class.getResource( "/files/grains.tif" ).getFile() ); new MorphologicalSegmentation().run( null ); }
/** * Main method to test and debug the Label Edition plugin * * @param args */ public static void main( final String[] args ) { ImageJ.main( args ); IJ.open( MorphologicalSegmentationTest.class.getResource( "/files/grains-med-WTH-lbl.tif" ).getFile() ); new LabelEdition().run( null ); } }
public static void main( final String[] args ) { ImageJ.main( args ); final KalmanTrackerInteractiveTest3 tester = new KalmanTrackerInteractiveTest3(); System.out.println( "Straight line with Kalman tracker:" ); tester.test( tester.createSingleLine() ); }
public static void main(final String[] args) { ImageJ.main(args); final File file = new File(AppUtils.getBaseDirectory(TrackMate.class), "samples/FakeTracks.xml"); ij.ImageJ.main(args); final TmXmlReader reader = new TmXmlReader(file); final Model model = reader.getModel(); model.setLogger(Logger.DEFAULT_LOGGER); // System.out.println(model); // System.out.println(model.getFeatureModel()); final TrackMate trackmate = new TrackMate(model, null); // Export final ExportStatsToIJAction exporter = new ExportStatsToIJAction(); exporter.execute(trackmate); }
public static void main( final String[] args ) { ImageJ.main( args ); final File file = new File( "/Users/tinevez/Google Drive/Projects/Contacts/raw data/2015-09-17/Trackmate files/SiC + SAg2_1_20_BCells.xml" ); final LoadTrackMatePlugIn_ loader = new LoadTrackMatePlugIn_(); loader.run( file.getAbsolutePath() ); loader.getSettings().imp.setDisplayMode( IJ.GRAYSCALE ); for ( final TrackMateModelView view : loader.getController().getGuimodel().getViews() ) { view.setDisplaySettings( TrackMateModelView.KEY_TRACK_DISPLAY_DEPTH, 100 ); view.setDisplaySettings( TrackMateModelView.KEY_TRACK_DISPLAY_MODE, TrackMateModelView.TRACK_DISPLAY_MODE_LOCAL_BACKWARD ); } final TrackMate trackmate = loader.getController().getPlugin(); new CaptureOverlayAction( loader.getController().getGUI() ).execute( trackmate ); } }
/** * @param args */ public static void main(String[] args) { System.out.println(ImageJ_3D_Viewer.getJava3DVersion()); File file = new File(AppUtils.getBaseDirectory(TrackMate.class), "samples/FakeTracks.xml"); ij.ImageJ.main(args); TmXmlReader reader = new TmXmlReader(file); Model model = reader.getModel(); Image3DUniverse universe = new Image3DUniverse(); universe.show(); SpotDisplayer3D displayer = new SpotDisplayer3D(model, new SelectionModel(model), universe); displayer.render(); displayer.setDisplaySettings(TrackMateModelView.KEY_TRACK_DISPLAY_MODE, TrackMateModelView.TRACK_DISPLAY_MODE_LOCAL); displayer.refresh(); System.out.println(universe.getContents()); }
/** * Interactive test. */ public static void main( final String[] args ) throws Exception { final BlobDescriptiveStatisticsTest test = new BlobDescriptiveStatisticsTest(); test.setUp(); final Spot tmpSpot = new Spot( CENTER[ 0 ], CENTER[ 1 ], CENTER[ 2 ], RADIUS, -1d ); final SpotNeighborhood< UnsignedShortType > disc = new SpotNeighborhood< >( tmpSpot, test.img2D ); for ( final UnsignedShortType pixel : disc ) { pixel.set( 1500 ); } ij.ImageJ.main( args ); net.imglib2.img.display.imagej.ImageJFunctions.show( test.img2D ); }