sequencerRun.getName(), htsfSample.getBarcode(), laneIndex, 1)); copy1Job.addArgument(CopyCLI.DESTINATION, r1FastqFile.getAbsolutePath()); copy1Job.addArgument(CopyCLI.MIMETYPE, MimeType.FASTQ.toString()); graph.addVertex(copy1Job); graph.addEdge(makeJob, copy1Job); getWorkflowPlan().getSequencerRun().getName(), htsfSample.getBarcode(), laneIndex, 2)); copy2Job.addArgument(CopyCLI.DESTINATION, r2FastqFile.getAbsolutePath()); copy2Job.addArgument(CopyCLI.MIMETYPE, MimeType.FASTQ.toString()); graph.addVertex(copy2Job); graph.addEdge(makeJob, copy2Job);