Public

<init>

getQualifier

getSecondaryId

ScheduledThreadPoolExecutor

Reactive rest calls using spring rest template

ObjectMapper provides functionality for reading and writing JSON, either to and
from basic POJOs (Pl

com.fasterxml.jackson.databind.ObjectMapper

This exception is thrown when a program attempts to create an URL from an
incorrect specification.

java.net.MalformedURLException

java.nio.file.Path

An exception that indicates a failed JDBC operation. It provides the following
information about pro

java.sql.SQLException

A TimeUnit represents time durations at a given unit of granularity and provides
utility methods to 

java.util.concurrent.TimeUnit

General IO stream manipulation utilities. This class provides static utility
methods for input/outpu

org.apache.commons.io.IOUtils

onRequestPermissionsResult

setScale

getSharedPreferences

/**
 * Persist the Interaction according to its PSI description. A Shortlabel is automatically generated based on
 * the gene names of the participant, if no gene name are available we use the protein AC. An Interaction
 * can be linked to multiple experiment in PSI, we do take it into account and we manages cases where an interaction
 * already exists, attached to one Experiment (let's call it E1) and the same interaction is also declared in the
 * PSI file as interacting in E1 and E2, in which case we just create an extra interaction and link it to E2. 
 * So far, we do not automatically link several Experiment to a single Interaction using the PSI loader. 
 *
 * @param interactionTag the PSI definition of the Interaction
 *
 * @return the collection of created IntAct Interaction.
 *
 * @throws IntactException if an error occurs while persisting the data in IntAct.
 */

// that updates the experiment collection and only leaves those for which we have to create a new interaction

// LOOP HERE OVER THE RESULT COLLECTION(shortlabel, experiment)

/* Components
            * The way to create an Interaction is NOT TRIVIAL: we have firstly to create an
            * Interaction Object with an empty collection of Component. and Then we have to
            * use the interaction.addComponent( Component c ) to fill it up.
            */

// check if there is a Kd value available

// search for an annotation to re-use, instead of creating a new one.

// doesn't exist, then create a new Annotation

// no need for an else, the additional annotation topic have been controlled by the checker.

// TODO clean that thing. Right now we are most of the time stuffing the author confidence as annotation

// TODO look after that unit parameter, we might have to adapt the CvTopic accordingly later.

// check if that annotation could not be shared.

How to useGoXrefHelper in uk.ac.ebi.intact.application.commons.go

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How to use
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uk.ac.ebi.intact.application.commons.go