How to use uk.ac.ebi.intact.core.persister

protected Key keyForExperiment(Experiment experiment) {
  return new Key(new ExperimentKeyCalculator().calculateExperimentKey(experiment));
}

protected void copyLifecycleEvent( LifecycleEvent source, LifecycleEvent target ) {
  copyProperty(source, "event", target);
  copyProperty(source, "who", target);
  copyProperty(source, "when", target);
  copyProperty(source, "publication", target);
  copyProperty(source, "note", target);
}

private void synchronizeInstitution( Institution institution, boolean synchronyzeCommonAttributes ) {
  if (synchronyzeCommonAttributes){
    synchronizeAnnotatedObjectCommons( institution );
  }
}

  protected Key keyForFeature(Feature feature) {


    if (feature.getComponent() == null) {
      throw new IllegalArgumentException("Cannot create a feature key for feature without component: " + feature);
    }

    Key componentKey = keyFor(feature.getComponent());
    return new Key(new FeatureKeyCalculator().calculateFeatureKey(feature) + "___" + componentKey.getUniqueString());

//        return new Key( keyForAnnotatedObject( feature ).getUniqueString() + "___" + componentKey.getUniqueString() );
  }
 

/**
 * Imports an IntactEntry into intact
 *
 * @param entry  the intact entry to import
 *
 * @return report of the import
 *
 * @throws PersisterException thrown if there are problems persisting the data in the intact-model database
 */
public void importIntoIntact(IntactEntry entry) throws PersisterException {
  corePersister.saveOrUpdate(entry);
}

/**
 * Checks is the given object already synchronized with the persistence session.
 * @param intactObject object to be synced.
 * @return a response that contains the answer.
 */
protected final SyncTransientResponse<T> syncIfTransientResponse(T intactObject) {
   T refreshedObject = syncIfTransient(intactObject);
  if (refreshedObject.getAc() != null) {
    return new SyncTransientResponse<T>(true, refreshedObject);
  }
  
  return new SyncTransientResponse<T>(false, syncAttributes(intactObject));
}

  public PersisterUnexpectedException(String message, Throwable cause) {
    super(message, cause);
    PersisterContext.getInstance().clear();
  }
}

/**
 * Mandatory method to execute the actual data persister in the database.
 */
public final void commit() {
  PersisterContext.getInstance().persistAll();
}

  protected boolean isCollectionClonable(Collection col) {
    return IntactCore.isInitialized(col);
  }
}

  @Override
  protected PersisterContext initialValue() {
    return new PersisterContext();
  }
};

  @Override
  protected SyncContext initialValue() {
    return new SyncContext();
  }
};

  protected Key keyForFeature(Feature feature) {


    if (feature.getComponent() == null) {
      throw new IllegalArgumentException("Cannot create a feature key for feature without component: " + feature);
    }

    Key componentKey = keyFor(feature.getComponent());
    return new Key(new FeatureKeyCalculator().calculateFeatureKey(feature) + "___" + componentKey.getUniqueString());

//        return new Key( keyForAnnotatedObject( feature ).getUniqueString() + "___" + componentKey.getUniqueString() );
  }
 

protected Key keyForExperiment(Experiment experiment) {
  return new Key(new ExperimentKeyCalculator().calculateExperimentKey(experiment));
}

protected void copyBioSource( BioSource source, BioSource target ) {
  copyProperty(source, "taxId", target);
  copyProperty(source, "cvTissue", target);
  copyProperty(source, "cvCellType", target);
}

  public PersisterException(String message, Throwable cause) {
    super(message, cause);
    PersisterContext.getInstance().clear();
  }
}

private void synchronizeInstitution( Institution institution, boolean synchronyzeCommonAttributes ) {
  if (synchronyzeCommonAttributes){
    synchronizeAnnotatedObjectCommons( institution );
  }
}

protected void copyLifecycleEvent( LifecycleEvent source, LifecycleEvent target ) {
  copyProperty(source, "event", target);
  copyProperty(source, "who", target);
  copyProperty(source, "when", target);
  copyProperty(source, "publication", target);
  copyProperty(source, "note", target);
}

public PersisterUnexpectedException(String message) {
  super(message);
  PersisterContext.getInstance().clear();
}

protected void copyBioSource( BioSource source, BioSource target ) {
  copyProperty(source, "taxId", target);
  copyProperty(source, "cvTissue", target);
  copyProperty(source, "cvCellType", target);
}

protected void copyInstitution( Institution source, Institution target ) {
  copyProperty(source, "url", target);
  copyProperty(source, "postalAddress", target);
}