public SignalPMatchParser(String typeShortName, SignatureLibraryRelease signatureLibraryRelease) { this.type = SignalPOrganismType.getSignalPOrganismTypeByShortName(typeShortName); this.signatureLibraryRelease = signatureLibraryRelease; }
public SignalPMatchParser(String typeShortName, SignatureLibraryRelease signatureLibraryRelease) { this.type = SignalPOrganismType.getSignalPOrganismTypeByShortName(typeShortName); this.signatureLibraryRelease = signatureLibraryRelease; }
LOGGER.error("SignalP organsim type not set in job XML, or not a valid value"); throw new IllegalStateException("SignalP organsim type not set in job XML"); } else if (!type.equals(SignalPOrganismType.getSignalPOrganismTypeByShortName(typeString))) { LOGGER.error("SignalP organsim type in file:" + typeString + " does not match that supplied in job XML: " + type.getTypeShortName()); throw new IllegalStateException("SignalP organsim type in file:" + typeString + " does not match that supplied in job XML: " + type.getTypeShortName());
LOGGER.error("SignalP organsim type not set in job XML, or not a valid value"); throw new IllegalStateException("SignalP organsim type not set in job XML"); } else if (!type.equals(SignalPOrganismType.getSignalPOrganismTypeByShortName(typeString))) { LOGGER.error("SignalP organsim type in file:" + typeString + " does not match that supplied in job XML: " + type.getTypeShortName()); throw new IllegalStateException("SignalP organsim type in file:" + typeString + " does not match that supplied in job XML: " + type.getTypeShortName());