for (Entry entry : entries) { Set<String> signatureAcs = (Set<String>) getEntry2SignaturesMap().get(entry.getAccession()); if (signatureAcs == null) { throw new IllegalStateException("Could not load any signature accession for entry accession - " + entry.getAccession() + " from external database!"); log.warn("Signatures could not be found in the database: " + signatureAcs.toString() + " No signatures for entry " + entry.getAccession() + " could be found in the database.");
StringBuilder dbxrefAttributeValue = new StringBuilder("\"InterPro:"); dbxrefAttributeValue .append(interProEntry.getAccession()) .append('"');
StringBuilder dbxrefAttributeValue = new StringBuilder("\"InterPro:"); dbxrefAttributeValue .append(interProEntry.getAccession()) .append('"');
mappingFields.add(interProEntry.getAccession()); // The corresponding InterPro entry (if iprlookup requested by the user)
Entry interProEntry = signature.getEntry(); if (interProEntry != null) { mappingFields.add(interProEntry.getAccession()); mappingFields.add(interProEntry.getDescription()); if (mapToGO) {
Entry interProEntry = signature.getEntry(); if (interProEntry != null) { mappingFields.add(interProEntry.getAccession()); mappingFields.add(interProEntry.getDescription()); if (mapToGO) {
mappingFields.add(interProEntry.getAccession()); // The corresponding InterPro entry (if iprlookup requested by the user)