report.addWarning("The interactor " + interactor.getAc() + " was matching the name " + name + ". As the organism of the matching protein is null we cannot take into account this protein."); interactorsAc.add(interactor.getAc()); report.addWarning("The interactor " + interactor.getAc() + " was matching the name " + name + " but its organism " + interactorBiosource.getAc() + " is not matching " + organism); report.addWarning("The interactor " + interactor.getAc() + " was matching the name " + name + " but its organism ("+interactorBiosource.getAc()+") doesn't have a valid taxId and is not matching " + organism); interactorsAc.add(interactor.getAc()); report.addWarning("The interactor " + interactor.getAc() + " was matching the name " + name + " but its organism is null and is not matching " + organism);
@Override public String toString() { String result; Iterator i; result = "AC: " + this.getAc() + " Owner: " + this.getOwner().getShortLabel() + " Label: " + this.getShortLabel() + "["; if ( null != this.getXrefs() ) { i = this.getXrefs().iterator(); while ( i.hasNext() ) { result = result + i.next(); } } return result + "]"; }
@Override public String toString() { String result; Iterator i; result = "AC: " + this.getAc() + " Owner: " + this.getOwner().getShortLabel() + " Label: " + this.getShortLabel() + "["; if ( null != this.getXrefs() ) { i = this.getXrefs().iterator(); while ( i.hasNext() ) { result = result + i.next(); } } return result + "]"; }
@Override public String toString() { String result; Iterator i; result = "AC: " + this.getAc() + " Owner: " + this.getOwner().getShortLabel() + " Label: " + this.getShortLabel() + "["; if ( null != this.getXrefs() ) { i = this.getXrefs().iterator(); while ( i.hasNext() ) { result = result + i.next(); } } return result + "]"; }
if( t != null && !t.equals(tc) ) { log.warn( "Interactors with the same identity xref(s) but with different BioSource: " + "["+ interactor.getShortLabel() +" / "+ interactor.getAc() +" / taxid:"+ t +"] and " + "["+ interactorCandidate.getShortLabel() +" / "+ interactorCandidate.getAc() +" / taxid:"+ tc +"]" );
if( t != null && !t.equals(tc) ) { log.warn( "Interactors with the same identity xref(s) but with different BioSource: " + "["+ interactor.getShortLabel() +" / "+ interactor.getAc() +" / taxid:"+ t +"] and " + "["+ interactorCandidate.getShortLabel() +" / "+ interactorCandidate.getAc() +" / taxid:"+ tc +"]" );