/** * Tells if the given IntAct Protein has already been generated in PSI. * * @return true is the protein has already been converted to XML, otherwise false. */ public boolean isAlreadyDefined( Interactor interactor ) { return interactors.containsKey( interactor.getAc() ); }
/** * Declare in the session that the given protein has been already converted in XML. */ public void declareAlreadyDefined( Interactor interactor ) { interactors.put( interactor.getAc(), null ); }
/** * Declare in the session that the given protein has been already converted in XML. */ public void declareAlreadyDefined( Interactor interactor ) { interactors.put( interactor.getAc(), null ); }
/** * Declare in the session that the given protein has been already converted in XML. */ public void declareAlreadyDefined( Interactor interactor ) { interactors.put( interactor.getAc(), null ); }
/** * Tells if the given IntAct Protein has already been generated in PSI. * * @return true is the protein has already been converted to XML, otherwise false. */ public boolean isAlreadyDefined( Interactor interactor ) { return interactors.containsKey( interactor.getAc() ); }
/** * Tells if the given IntAct Protein has already been generated in PSI. * * @return true is the protein has already been converted to XML, otherwise false. */ public boolean isAlreadyDefined( Interactor interactor ) { return interactors.containsKey( interactor.getAc() ); }
protected CrossReference createCrossReferenceFromAc(uk.ac.ebi.intact.model.Interactor mol) { CrossReference acField = new CrossReferenceImpl(); String db = defaultInstitution; acField.setDatabase(db); acField.setIdentifier(mol.getAc()); return acField; }
protected void indexInteractorAC(Interactor interactor, SolrInputDocument solrDocument){ // search fields solrDocument.addField(ComplexFieldNames.INTERACTOR_ID, interactor.getAc()) ; // index source of complex id if ( interactor.getOwner() != null ) { solrDocument.addField ( ComplexFieldNames.INTERACTOR_ID, interactor.getOwner().getShortLabel() ) ; solrDocument.addField ( ComplexFieldNames.INTERACTOR_ID, interactor.getOwner().getShortLabel() + ":" + interactor.getAc() ) ; } }
interactor.getAc() + " / " + interactor.getShortLabel() + " / " + component.getClass() + "). ");
interactor.getAc() + " / " + interactor.getShortLabel() + " / " + component.getClass() + "). ");
"AC: " + interactor.getAc() + " Shortlabel:" + interactor.getShortLabel());
interactors.add( interactor.getAc() );
interactors.add( c.getInteractor().getAc() ); // Build non redundant list