How to use

getParentSynonyms

method

in

uk.ac.ebi.intact.bridges.ontologies.OntologyDocument

public void addDocument(OntologyDocument ontologyDoc) throws IOException {
  Document doc = new Document();
  doc.add(new Field(FieldName.ONTOLOGY, ontologyDoc.getOntology(), Field.Store.YES, Field.Index.UN_TOKENIZED));
  if (ontologyDoc.getParentId() != null) {
    doc.add(new Field(FieldName.PARENT_ID, ontologyDoc.getParentId(), Field.Store.YES, Field.Index.UN_TOKENIZED));
    doc.add(new Field(FieldName.PARENT_NAME, ontologyDoc.getParentName(), Field.Store.YES, Field.Index.TOKENIZED));
    doc.add(new Field(FieldName.PARENT_NAME_SORTABLE, ontologyDoc.getParentName(), Field.Store.YES, Field.Index.UN_TOKENIZED));
  }
  if (ontologyDoc.getChildId() != null) {
    doc.add(new Field(FieldName.CHILDREN_ID, ontologyDoc.getChildId(), Field.Store.YES, Field.Index.UN_TOKENIZED));
    doc.add(new Field(FieldName.CHILDREN_NAME, ontologyDoc.getChildName(), Field.Store.YES, Field.Index.TOKENIZED));
    doc.add(new Field(FieldName.CHILDREN_NAME_SORTABLE, ontologyDoc.getChildName(), Field.Store.YES, Field.Index.UN_TOKENIZED));
  }
  if (ontologyDoc.getRelationshipType() != null) {
    doc.add(new Field(FieldName.RELATIONSHIP_TYPE, ontologyDoc.getRelationshipType(), Field.Store.YES, Field.Index.UN_TOKENIZED));
  }
  doc.add(new Field(FieldName.RELATIONSHIP_CYCLIC, String.valueOf(ontologyDoc.isCyclicRelationship()),
           Field.Store.YES, Field.Index.UN_TOKENIZED));
  doc.add(new Field(FieldName.PARENT_SYNONYMS, StringUtils.join(ontologyDoc.getParentSynonyms(), SYNONYM_SEPARATOR), Field.Store.YES, Field.Index.UN_TOKENIZED));
  doc.add(new Field(FieldName.CHILDREN_SYNONYMS, StringUtils.join(ontologyDoc.getChildSynonyms(), SYNONYM_SEPARATOR), Field.Store.YES, Field.Index.UN_TOKENIZED));
  this.indexWriter.addDocument(doc);
}

private List<OntologyTerm> processParentsHits(OntologyHits ontologyHits, String id) throws IOException {
  List<OntologyTerm> terms = new ArrayList<OntologyTerm>();
  List<String> processedIds = new ArrayList<String>();
  processedIds.add(id);
  for (int i=0; i<ontologyHits.length(); i++) {
    final OntologyDocument document = ontologyHits.doc(i);
    if (document.getParentId() != null && !processedIds.contains(document.getParentId())) {
      terms.add(newInternalOntologyTerm(searcher, document.getParentId(), document.getParentName(), document.getParentSynonyms()));
      processedIds.add(document.getParentId());
    }
  }
  return terms;
}

public LazyLoadedOntologyTerm(OntologyIndexSearcher searcher, String id) {
  this.searcher = searcher;
  this.id = id;
  try {
    final OntologyHits ontologyHits = searcher.searchByParentId(id);
    if (ontologyHits.length() > 0) {
      final OntologyDocument document = ontologyHits.doc(0);
      this.name = document.getParentName();
      this.parentSynonyms = document.getParentSynonyms();
    }
  } catch (IOException e) {
    throw new IllegalArgumentException("Problem loading name for term: "+id, e);
  }
}

private SolrInputDocument createSolrInputDocument(OntologyDocument ontologyDocument) {
  SolrInputDocument doc = new SolrInputDocument();
  String uniqueKey = ontologyDocument.getOntology() + "_" + ontologyDocument.getParentId() + "_" + ontologyDocument.getChildId() + "_" + ontologyDocument.getRelationshipType();
  addField(doc, OntologyFieldNames.ID, uniqueKey, false);
  addField(doc, OntologyFieldNames.ONTOLOGY, ontologyDocument.getOntology(), false);
  addField(doc, OntologyFieldNames.PARENT_ID, ontologyDocument.getParentId(), false);
  addField(doc, OntologyFieldNames.PARENT_NAME, ontologyDocument.getParentName(), true);
  addField(doc, OntologyFieldNames.CHILD_ID, ontologyDocument.getChildId(), false);
  addField(doc, OntologyFieldNames.CHILD_NAME, ontologyDocument.getChildName(), true);
  //addField(doc, OntologyFieldNames.RELATIONSHIP_TYPE, ontologyDocument.getRelationshipType(), false);
  //addField(doc, OntologyFieldNames.CYCLIC, ontologyDocument.isCyclicRelationship(), false);
  for (String synonym : ontologyDocument.getParentSynonyms()) {
    addField(doc, OntologyFieldNames.PARENT_SYNONYMS, synonym, false);
  }
  for (String synonym : ontologyDocument.getChildSynonyms()) {
    addField(doc, OntologyFieldNames.CHILDREN_SYNONYMS, synonym, false);
  }
  return doc;
}

private SolrInputDocument createSolrInputDocument(OntologyDocument ontologyDocument) {
  SolrInputDocument doc = new SolrInputDocument();
  String uniqueKey = ontologyDocument.getOntology() + "_" + ontologyDocument.getParentId() + "_" + ontologyDocument.getChildId() + "_" + ontologyDocument.getRelationshipType();
  addField(doc, OntologyFieldNames.ID, uniqueKey, false);
  addField(doc, OntologyFieldNames.ONTOLOGY, ontologyDocument.getOntology(), false);
  addField(doc, OntologyFieldNames.PARENT_ID, ontologyDocument.getParentId(), false);
  addField(doc, OntologyFieldNames.PARENT_NAME, ontologyDocument.getParentName(), true);
  addField(doc, OntologyFieldNames.CHILD_ID, ontologyDocument.getChildId(), false);
  addField(doc, OntologyFieldNames.CHILD_NAME, ontologyDocument.getChildName(), true);
  addField(doc, OntologyFieldNames.RELATIONSHIP_TYPE, ontologyDocument.getRelationshipType(), false);
  addField(doc, OntologyFieldNames.CYCLIC, ontologyDocument.isCyclicRelationship(), false);
  
  for (String synonym : ontologyDocument.getParentSynonyms()) {
    addField(doc, OntologyFieldNames.PARENT_SYNONYMS, synonym, false);
  }
  for (String synonym : ontologyDocument.getChildSynonyms()) {
    addField(doc, OntologyFieldNames.CHILDREN_SYNONYMS, synonym, false);
  }
  return doc;
}