How to use

getInstance

method

in

uk.ac.ebi.intact.application.dataConversion.psiUpload.util.CommandLineOptions

boolean guiEnabled = CommandLineOptions.getInstance().isGuiEnabled();
Monitor monitor = null;
if ( guiEnabled ) {

boolean guiEnabled = CommandLineOptions.getInstance().isGuiEnabled();
Monitor monitor = null;
if ( guiEnabled ) {

boolean guiEnabled = CommandLineOptions.getInstance().isGuiEnabled();
Monitor monitor = null;
if ( guiEnabled ) {

final boolean forceEnabled = line.hasOption( "force" );
CommandLineOptions myOptions = CommandLineOptions.getInstance();

final boolean forceEnabled = line.hasOption( "force" );
CommandLineOptions myOptions = CommandLineOptions.getInstance();

final boolean forceEnabled = line.hasOption( "force" );
CommandLineOptions myOptions = CommandLineOptions.getInstance();

boolean guiEnabled = CommandLineOptions.getInstance().isGuiEnabled();
Monitor monitor = null;
boolean displayProgressBar = guiEnabled && keys.size() > 0;

boolean guiEnabled = CommandLineOptions.getInstance().isGuiEnabled();
Monitor monitor = null;
boolean displayProgressBar = guiEnabled && keys.size() > 0;

boolean guiEnabled = CommandLineOptions.getInstance().isGuiEnabled();
Monitor monitor = null;
boolean displayProgressBar = guiEnabled && keys.size() > 0;

if ( CommandLineOptions.getInstance().reuseProtein() && taxId != null ) {

if ( CommandLineOptions.getInstance().reuseProtein() && taxId != null ) {

if ( CommandLineOptions.getInstance().reuseProtein() && taxId != null ) {

if ( CommandLineOptions.getInstance().hasDefaultInteractionType() ) {
  final String defaultInteractionType = CommandLineOptions.getInstance().getDefaultInteractionType();
  if ( DEBUG ) {
    System.err.println( "Give a default interactionType: " + defaultInteractionType );

if ( CommandLineOptions.getInstance().hasDefaultInteractionType() ) {
  final String defaultInteractionType = CommandLineOptions.getInstance().getDefaultInteractionType();
  if ( DEBUG ) {
    System.err.println( "Give a default interactionType: " + defaultInteractionType );

if ( CommandLineOptions.getInstance().hasDefaultInteractionType() ) {
  final String defaultInteractionType = CommandLineOptions.getInstance().getDefaultInteractionType();
  if ( DEBUG ) {
    System.err.println( "Give a default interactionType: " + defaultInteractionType );

} else {
  if ( CommandLineOptions.getInstance().hasDefaultInteractorTaxid() ) {
    final String defaultTaxid = CommandLineOptions.getInstance().getDefaultInteractorTaxid();
    hostOrganism = new OrganismTag( defaultTaxid );

} else {
  if ( CommandLineOptions.getInstance().hasDefaultInteractorTaxid() ) {
    final String defaultTaxid = CommandLineOptions.getInstance().getDefaultInteractorTaxid();
    hostOrganism = new OrganismTag( defaultTaxid );

} else {
  if ( CommandLineOptions.getInstance().hasDefaultInteractorTaxid() ) {
    final String defaultTaxid = CommandLineOptions.getInstance().getDefaultInteractorTaxid();
    hostOrganism = new OrganismTag( defaultTaxid );