Public

<init>

getAnnotations

getConfidence

getExperiments

getFullname

getInteractionType

getParticipants

getShortlabel

getXrefs

InteractionTag

Start an intent from android

An output stream that writes bytes to a file. If the output file exists, it can
be replaced or appen

java.io.FileOutputStream

An immutable arbitrary-precision signed decimal.A value is represented by an
arbitrary-precision "un

java.math.BigDecimal

A ConnectException is thrown if a connection cannot be established to a remote
host on a specific po

java.net.ConnectException

An exception that indicates a failed JDBC operation. It provides the following
information about pro

java.sql.SQLException

 ResourceBundle is an abstract class which is the superclass of classes which
provide Locale-specifi

java.util.ResourceBundle

scala.Option

scheduleAtFixedRate

getSupportFragmentManager

getResourceAsStream

// check that the CvInteractorType( interaction is available ).

// TODO do we have to check that we have at least 1 bait and 1..m preys/neutrals

// 0 or 1 dissociation constant can be specified, no more.

// TODO find a way to indicate to the user which interaction we are talking about

"More than one dissociation constant specified "

"in an Interaction (one at most is allowed)."

/**
 * Persist the Interaction according to its PSI description. A Shortlabel is automatically generated based on
 * the gene names of the participant, if no gene name are available we use the protein AC. An Interaction
 * can be linked to multiple experiment in PSI, we do take it into account and we manages cases where an interaction
 * already exists, attached to one Experiment (let's call it E1) and the same interaction is also declared in the
 * PSI file as interacting in E1 and E2, in which case we just create an extra interaction and link it to E2. 
 * So far, we do not automatically link several Experiment to a single Interaction using the PSI loader. 
 *
 * @param interactionTag the PSI definition of the Interaction
 *
 * @return the collection of created IntAct Interaction.
 *
 * @throws IntactException if an error occurs while persisting the data in IntAct.
 */

// that updates the experiment collection and only leaves those for which we have to create a new interaction

// LOOP HERE OVER THE RESULT COLLECTION(shortlabel, experiment)

/* Components
            * The way to create an Interaction is NOT TRIVIAL: we have firstly to create an
            * Interaction Object with an empty collection of Component. and Then we have to
            * use the interaction.addComponent( Component c ) to fill it up.
            */

// check if there is a Kd value available

// search for an annotation to re-use, instead of creating a new one.

// doesn't exist, then create a new Annotation

// no need for an else, the additional annotation topic have been controlled by the checker.

// TODO clean that thing. Right now we are most of the time stuffing the author confidence as annotation

// TODO look after that unit parameter, we might have to adapt the CvTopic accordingly later.

// check if that annotation could not be shared.

How to use getInteractionTypemethodin uk.ac.ebi.intact.application.dataConversion.psiUpload.model.InteractionTag

Best Java code snippets using uk.ac.ebi.intact.application.dataConversion.psiUpload.model.InteractionTag.getInteractionType (Showing top 6 results out of 315)

How to use
getInteractionType
method
in
uk.ac.ebi.intact.application.dataConversion.psiUpload.model.InteractionTag