public void setNames( Names value ) { organism.setNames( value ); }
public static Organism createOrganism(int taxid, String name) { Organism organism = new Organism(); organism.setNames(createNames(name, null)); organism.setNcbiTaxId(taxid); return organism; }
xmlOrganism.setNames(names);
Organism organism = new Organism(); organism.setNcbiTaxId(hostOrganism.getNcbiTaxId()); organism.setNames(hostOrganism.getNames()); organism.setCellType(hostOrganism.getCellType()); organism.setCompartment(hostOrganism.getCompartment());
public psidev.psi.mi.xml.model.Organism fromJaxb( psidev.psi.mi.xml254.jaxb.BioSource jOrganism ) throws ConverterException { if ( jOrganism == null ) { throw new IllegalArgumentException( "You must give a non null JAXB Organism." ); } psidev.psi.mi.xml.model.Organism mOrganism = new psidev.psi.mi.xml.model.Organism(); // Initialise the model reading the Jaxb object // 1. set attributes mOrganism.setNcbiTaxId( jOrganism.getNcbiTaxId() ); // 2. set encapsulated objects // names if ( jOrganism.getNames() != null ) { mOrganism.setNames( namesConverter.fromJaxb( jOrganism.getNames() ) ); } // cell type if ( jOrganism.getCellType() != null ) { mOrganism.setCellType( openCvTypeConverter.fromJaxb( jOrganism.getCellType(), CellType.class ) ); } // compartment if ( jOrganism.getCompartment() != null ) { mOrganism.setCompartment( openCvTypeConverter.fromJaxb( jOrganism.getCompartment(), Compartment.class ) ); } // tissue if ( jOrganism.getTissue() != null ) { mOrganism.setTissue( openCvTypeConverter.fromJaxb( jOrganism.getTissue(), Tissue.class ) ); } return mOrganism; }
public psidev.psi.mi.xml.model.Organism fromJaxb( psidev.psi.mi.xml253.jaxb.BioSourceType jOrganism ) throws ConverterException { if ( jOrganism == null ) { throw new IllegalArgumentException( "You must give a non null JAXB Organism." ); } psidev.psi.mi.xml.model.Organism mOrganism = new psidev.psi.mi.xml.model.Organism(); // Initialise the model reading the Jaxb object // 1. set attributes mOrganism.setNcbiTaxId( jOrganism.getNcbiTaxId() ); // 2. set encapsulated objects // names if ( jOrganism.getNames() != null ) { mOrganism.setNames( namesConverter.fromJaxb( jOrganism.getNames() ) ); } // cell type if ( jOrganism.getCellType() != null ) { mOrganism.setCellType( openCvTypeConverter.fromJaxb( jOrganism.getCellType(), CellType.class ) ); } // compartment if ( jOrganism.getCompartment() != null ) { mOrganism.setCompartment( openCvTypeConverter.fromJaxb( jOrganism.getCompartment(), Compartment.class ) ); } // tissue if ( jOrganism.getTissue() != null ) { mOrganism.setTissue( openCvTypeConverter.fromJaxb( jOrganism.getTissue(), Tissue.class ) ); } return mOrganism; }
Organism organism = new Organism(); organism.setNcbiTaxId(hostOrganism.getNcbiTaxId()); organism.setNames(hostOrganism.getNames()); organism.setCellType(hostOrganism.getCellType()); organism.setCompartment(hostOrganism.getCompartment());
organism.setNames(names); if (shortlabel != null) { names.setShortLabel(shortlabel);