bI.setConfidenceValues(encoreInteraction.getConfidenceValues()); bI.setDetectionMethods(psiDetectionMethods); bI.setInteractionTypes(psiInteractionTypes); bI.setPublications(encoreInteraction.getPublicationIds()); return bI;
bI.setConfidenceValues(encoreInteraction.getConfidenceValues()); bI.setDetectionMethods(psiDetectionMethods); bI.setInteractionTypes(psiInteractionTypes); bI.setPublications(encoreInteraction.getPublicationIds()); return bI;
public BinaryInteraction createInteractionRandom() { BinaryInteraction bi = buildInteraction( createProteinInteractorRandom(), createProteinInteractorRandom() ); CrossReference source = pickRandom( sourceDatabases ); bi.setAuthors( createList( createAuthorRandom() ) ); bi.setConfidenceValues( createList( createConfidenceRandom() ) ); bi.setDetectionMethods( createList( createInteractionDetectionMethodRandom() ) ); bi.setInteractionAcs( createList( createCrossReference( source.getDatabase(), source.getText() + nextId() ) ) ); bi.setInteractionTypes( createList( createInteractionTypeRandom() ) ); bi.setPublications( createList( createCrossReference( "pubmed", String.valueOf( boundRandom( 100000, 999999 ) ) ) ) ); bi.setSourceDatabases( createList( source ) ); return bi; }
expandedInteraction.setHostOrganism(interaction.getHostOrganism()); expandedInteraction.setInteractionAcs(interaction.getInteractionAcs()); expandedInteraction.setInteractionTypes(interaction.getInteractionTypes()); expandedInteraction.setPublications(interaction.getPublications()); expandedInteraction.setSourceDatabases(interaction.getSourceDatabases());
interaction.setAuthors(splitAuthor(line[PsimiTabColumns.PUB_AUTH.ordinal()])); interaction.setPublications(splitCrossReferences(line[PsimiTabColumns.PUB_ID.ordinal()])); interaction.setInteractionTypes(splitCrossReferences(line[PsimiTabColumns.INTERACTION_TYPE.ordinal()])); interaction.setSourceDatabases(splitCrossReferences(line[PsimiTabColumns.SOURCE.ordinal()])); interaction.setInteractionAcs(splitCrossReferences(line[PsimiTabColumns.INTERACTION_ID.ordinal()]));