private void printAliases(List<Alias> aliases) { log.info("--- Ordered list of Aliases ---"); for (Alias a : aliases) { log.info(a.getDbSource() + ":" + a.getName() + "(" + a.getAliasType() + ")"); } log.info("-------------------------------"); } }
public static String joinAliasCollection(List<Alias> collection) { StringBuilder sb = new StringBuilder(); if (collection != null && !collection.isEmpty()) { Iterator<Alias> iterator = collection.iterator(); while (iterator.hasNext()) { Alias field = iterator.next(); sb.append(joinAttributes(field.getDbSource(), field.getName(), field.getAliasType())); if (iterator.hasNext()) { sb.append(FIELD_DELIMITER); } } } else { sb.append('-'); } return sb.toString(); }
if (UNIPROT.equalsIgnoreCase(alias.getDbSource())){ if (CvAliasType.GENE_NAME.equalsIgnoreCase(alias.getAliasType())){ geneName = alias.getName();
for (Alias alias : interactor.getAliases()) { String acc = alias.getName(); String sourceIdDbName = alias.getDbSource(); int firtSize = accs.size(); updateAccMap(accs, acc, idDbNameList, sourceIdDbName);
xref.setSource(alias.getDbSource()); xref.setId(alias.getName()); physicalEntity.setXref(xref);