/** * {@inheritDoc} */ @Override public void removeAtom(int pos) { removeAtom(getAtom(pos)); }
sb.append(", #A:").append(getAtomCount()); for (int i = 0; i < getAtomCount(); i++) { sb.append(", ").append(getAtom(i).toString());
/** * {@inheritDoc} */ @Override public int getConnectedBondsCount(int idx) { return getAtom(idx).getBondCount(); }
sb.append(", #A:").append(getAtomCount()); for (int i = 0; i < getAtomCount(); i++) { sb.append(", ").append(getAtom(i).toString());
/** * {@inheritDoc} */ @Override public int getConnectedBondsCount(int idx) { return getAtom(idx).getBondCount(); }
/** * {@inheritDoc} */ @Override public void removeAtom(int pos) { removeAtom(getAtom(pos)); }
/** * {@inheritDoc} */ @Override public void addLonePair(int idx) { ILonePair lp = getBuilder().newInstance(ILonePair.class); lp.setAtom(getAtom(idx)); addLonePair(lp); }
/** * {@inheritDoc} */ @Override public void addSingleElectron(int idx) { ISingleElectron electron = getBuilder().newInstance(ISingleElectron.class); electron.setAtom(getAtom(idx)); addSingleElectron(electron); }
/** * {@inheritDoc} */ @Override public void addSingleElectron(int idx) { ISingleElectron electron = getBuilder().newInstance(ISingleElectron.class); electron.setAtom(getAtom(idx)); addSingleElectron(electron); }
/** * {@inheritDoc} */ @Override public void addLonePair(int idx) { ILonePair lp = getBuilder().newInstance(ILonePair.class); lp.setAtom(getAtom(idx)); addLonePair(lp); }
atomMap.put(this.atoms[i], clone.getAtom(i));
atomMap.put(this.atoms[i], clone.getAtom(i));