individual.setKaryotypicSex(ParamUtils.defaultObject(individual.getKaryotypicSex(), IndividualProperty.KaryotypicSex.UNKNOWN)); individual.setSex(ParamUtils.defaultObject(individual.getSex(), IndividualProperty.Sex.UNKNOWN)); individual.setAffectationStatus(ParamUtils.defaultObject(individual.getAffectationStatus(), IndividualProperty.AffectationStatus.UNKNOWN)); individual.setPhenotypes(ParamUtils.defaultObject(individual.getPhenotypes(), Collections.emptyList()));
setLifeStatus(IndividualProperty.LifeStatus.ABORTED).setAffectationStatus(IndividualProperty.AffectationStatus.AFFECTED). setSamples(Arrays.asList(new Sample().setId("1"), new Sample().setId("2"))).setParentalConsanguinity(true);
.setAffectationStatus(IndividualProperty.AffectationStatus.UNKNOWN), new QueryOptions(), sessionIdUser) .first().getId(); String individualId2 = catalogManager.getIndividualManager().create(studyFqn, new Individual().setId("INDIVIDUAL_2") .setKaryotypicSex(IndividualProperty.KaryotypicSex.UNKNOWN).setLifeStatus(IndividualProperty.LifeStatus.UNKNOWN) .setAffectationStatus(IndividualProperty.AffectationStatus.UNKNOWN), new QueryOptions(), sessionIdUser) .first().getId(); String individualId3 = catalogManager.getIndividualManager().create(studyFqn, new Individual().setId("INDIVIDUAL_3") .setKaryotypicSex(IndividualProperty.KaryotypicSex.UNKNOWN).setLifeStatus(IndividualProperty.LifeStatus.UNKNOWN) .setAffectationStatus(IndividualProperty.AffectationStatus.UNKNOWN), new QueryOptions(), sessionIdUser) .first().getId();