public StringConstructor getoBJECT() { if (!org.intermine.model.bio.SequenceVariantShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.bio.SequenceVariant"); if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.bio.SyntenyBlockShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.bio.SyntenyBlock"); if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.bio.SyntenyBlockShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.bio.SyntenyBlock"); if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.bio.InteractorShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.bio.Interactor"); if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.bio.SequenceVariantShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.bio.SequenceVariant"); if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.bio.MeshTermShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.bio.MeshTerm"); if (name != null) { sb.append("$_^aname$_^"); String string = name; while (string != null) { int delimPosition = string.indexOf("$_^"); if (delimPosition == -1) { sb.append(string); string = null; } else { sb.append(string.substring(0, delimPosition + 3)); sb.append("d"); string = string.substring(delimPosition + 3); } } } if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.bio.DOEvidenceShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.bio.DOEvidence"); if (evidence != null) { sb.append("$_^aevidence$_^"); String string = evidence; while (string != null) { int delimPosition = string.indexOf("$_^"); if (delimPosition == -1) { sb.append(string); string = null; } else { sb.append(string.substring(0, delimPosition + 3)); sb.append("d"); string = string.substring(delimPosition + 3); } } } if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.bio.OntologyEvidenceShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.bio.OntologyEvidence"); if (code != null) { sb.append("$_^rcode$_^").append(code.getId()); } if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.bio.OntologyEvidenceShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.bio.OntologyEvidence"); if (code != null) { sb.append("$_^rcode$_^").append(code.getId()); } if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.bio.OrthologueEvidenceShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.bio.OrthologueEvidence"); if (evidenceCode != null) { sb.append("$_^revidenceCode$_^").append(evidenceCode.getId()); } if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.testmodel.ThingShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.testmodel.Thing"); if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.testmodel.RandomInterfaceShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.testmodel.RandomInterface"); if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.testmodel.HasSecretarysShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.testmodel.HasSecretarys"); if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.bio.InteractionShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.bio.Interaction"); if (participant2 != null) { sb.append("$_^rparticipant2$_^").append(participant2.getId()); } if (participant1 != null) { sb.append("$_^rparticipant1$_^").append(participant1.getId()); } if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.testmodel.ImportantPersonShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.testmodel.ImportantPerson"); if (seniority != null) { sb.append("$_^aseniority$_^").append(seniority); } if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.testmodel.EmploymentPeriod.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.testmodel.EmploymentPeriod"); if (startDate != null) { sb.append("$_^astartDate$_^").append(startDate.getTime()); } if (endDate != null) { sb.append("$_^aendDate$_^").append(endDate.getTime()); } if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public StringConstructor getoBJECT() { if (!org.intermine.model.testmodel.HasAddressShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.testmodel.HasAddress"); if (address != null) { sb.append("$_^raddress$_^").append(address.getId()); } if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {
public void test1() throws Exception { Employee e = new Employee(); Department d = new Department(); e.setId(new Integer(1234)); e.setName("Employee1"); d.setId(new Integer(5678)); e.setDepartment(d); String expected = NotXmlParser.DELIM + "org.intermine.model.testmodel.Employee" + NotXmlParser.DELIM + "aage" + NotXmlParser.DELIM + "0" + NotXmlParser.DELIM + "rdepartment" + NotXmlParser.DELIM + "5678" + NotXmlParser.DELIM + "afullTime" + NotXmlParser.DELIM + "false" + NotXmlParser.DELIM + "aid" + NotXmlParser.DELIM + "1234" + NotXmlParser.DELIM + "aname" + NotXmlParser.DELIM + "Employee1"; String got = NotXmlRenderer.render(e).toString(); assertEquals(got, expected, got); }
public void testHandleDelims() throws Exception { Employee e = new Employee(); e.setId(new Integer(2874)); e.setName("Flibble $_^ Wotsit"); String notXml = NotXmlRenderer.render(e).toString(); Employee reparsed = (Employee) NotXmlParser.parse(notXml, os); assertEquals(e.getName(), reparsed.getName()); assertEquals(e.getId(), reparsed.getId()); }
public StringConstructor getoBJECT() { if (!org.intermine.model.testmodel.BrokeShadow.class.equals(getClass())) { return NotXmlRenderer.render(this); } StringConstructor sb = new StringConstructor(); sb.append("$_^org.intermine.model.testmodel.Broke"); sb.append("$_^adebt$_^").append(debt); sb.append("$_^ainterestRate$_^").append(interestRate); if (bank != null) { sb.append("$_^rbank$_^").append(bank.getId()); } if (owedBy != null) { sb.append("$_^rowedBy$_^").append(owedBy.getId()); } if (id != null) { sb.append("$_^aid$_^").append(id); } return sb; } public void setoBJECT(String notXml, ObjectStore os) {