"."+OME_XML_FORMAT); files.add(outputFile); XMLMockObjects xml = new XMLMockObjects(); XMLWriter writer = new XMLWriter(); writer.writeFile(inFile, xml.createImage(), true);
"."+OME_XML_FORMAT); files.add(outputFile); XMLMockObjects xml = new XMLMockObjects(); XMLWriter writer = new XMLWriter(); writer.writeFile(inFile, xml.createImage(), true);
"."+OME_XML_FORMAT); files.add(outputFile); XMLMockObjects xml = new XMLMockObjects(); XMLWriter writer = new XMLWriter(); writer.writeFile(inFile, xml.createImage(), true);
private int populateSPW(MetadataStore store, int screens, int plates, int rows, int cols, int fields, int acqs, boolean withMicrobeam) { final XMLMockObjects xml = new XMLMockObjects(); OME ome = null; if (screens==0) { ome = xml.createPopulatedPlate(plates, rows, cols, fields, acqs, withMicrobeam); } else { ome = xml.createPopulatedScreen(screens, plates, rows, cols, fields, acqs, withMicrobeam); } if (withMicrobeam) roiCount = roiCount + plates;; getOmeXmlMetadata().setRoot(new OMEXMLMetadataRoot(ome)); // copy populated SPW metadata into destination MetadataStore getOmeXmlService().convertMetadata(omeXmlMetadata, store); domains = new String[] {FormatTools.HCS_DOMAIN}; return ome.sizeOfImageList(); }
private int populateSPW(MetadataStore store, int screens, int plates, int rows, int cols, int fields, int acqs, boolean withMicrobeam) { final XMLMockObjects xml = new XMLMockObjects(); OME ome = null; if (screens==0) { ome = xml.createPopulatedPlate(plates, rows, cols, fields, acqs, withMicrobeam); } else { ome = xml.createPopulatedScreen(screens, plates, rows, cols, fields, acqs, withMicrobeam); } if (withMicrobeam) roiCount = roiCount + plates;; getOmeXmlMetadata().setRoot(new OMEXMLMetadataRoot(ome)); // copy populated SPW metadata into destination MetadataStore getOmeXmlService().convertMetadata(omeXmlMetadata, store); domains = new String[] {FormatTools.HCS_DOMAIN}; return ome.sizeOfImageList(); }
/** * Generates an <code>OME-XML</code> file. * * @param index The type of image to import. One of the constants defined * by this class. * @return The image file. * @throws Exception Thrown if an error occurred. */ private File createImageFile(int index) throws Exception { // First create an image File f = File.createTempFile("tempFileName","." + OME_XML); XMLMockObjects xml = new XMLMockObjects(); XMLWriter writer = new XMLWriter(); if (index == IMAGE_ROI) { writer.writeFile(f, xml.createImageWithROI(), true); } else if (index == IMAGE_ANNOTATED_DATA) { writer.writeFile(f, xml.createImageWithAnnotatedAcquisitionData(), true); } else { writer.writeFile(f, xml.createImageWithAcquisitionData(), true); } return f; }