How to use

net.imglib2.img.planar.PlanarImgFactory

constructor

@Override
public PlanarImgFactory< T > factory()
{
  return new PlanarImgFactory<>( linkedType );
}

@SuppressWarnings( { "unchecked", "rawtypes" } )
@Override
public < S > ImgFactory< S > imgFactory( final S type ) throws IncompatibleTypeException
{
  if ( NativeType.class.isInstance( type ) )
    return new PlanarImgFactory( ( NativeType ) type );
  throw new IncompatibleTypeException( this, type.getClass().getCanonicalName() + " does not implement NativeType." );
}

@Override
public <T extends RealType<T> & NativeType<T>> Dataset create(
  final T type, final long[] dims, final String name, final AxisType[] axes)
{
  final PlanarImgFactory<T> imgFactory = new PlanarImgFactory<T>();
  return create(imgFactory, type, dims, name, axes);
}

@SuppressWarnings( { "unchecked", "rawtypes" } )
@Override
public < S > ImgFactory< S > imgFactory( final S type ) throws IncompatibleTypeException
{
  if ( NativeType.class.isInstance( type ) )
    return new PlanarImgFactory( ( NativeType ) type );
  throw new IncompatibleTypeException( this, type.getClass().getCanonicalName() + " does not implement NativeType." );
}

/**
 * Create an {@link PlanarImg}<{@link LongType}, {@link LongArray}>.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< LongType, LongArray > longs( final long... dim )
{
  return ( PlanarImg< LongType, LongArray > ) new PlanarImgFactory<>( new LongType() ).create( dim );
}

/**
 * Create an {@link PlanarImg}<{@link UnsignedByteType}, {@link ByteArray}>.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< UnsignedByteType, ByteArray > unsignedBytes( final long... dim )
{
  return ( PlanarImg< UnsignedByteType, ByteArray > ) new PlanarImgFactory<>( new UnsignedByteType() ).create( dim );
}

/**
 * Create an {@link PlanarImg}<{@link UnsignedShortType}, {@link ShortArray}
 * >.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< UnsignedShortType, ShortArray > unsignedShorts( final long... dim )
{
  return ( PlanarImg< UnsignedShortType, ShortArray > ) new PlanarImgFactory<>( new UnsignedShortType() ).create( dim );
}

/**
 * Create an {@link PlanarImg}<{@link NativeBoolType}, {@link BooleanArray}>.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< NativeBoolType, BooleanArray > booleans( final long... dim )
{
  return ( PlanarImg< NativeBoolType, BooleanArray > ) new PlanarImgFactory<>( new NativeBoolType() ).create( dim );
}

/**
 * Create an {@link PlanarImg}<{@link BitType}, {@link LongArray}>.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< BitType, LongArray > bits( final long... dim )
{
  return ( PlanarImg< BitType, LongArray > ) new PlanarImgFactory<>( new BitType() ).create( dim );
}

/**
 * Create an {@link PlanarImg}<{@link IntType}, {@link IntArray}>.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< IntType, IntArray > ints( final long... dim )
{
  return ( PlanarImg< IntType, IntArray > ) new PlanarImgFactory<>( new IntType() ).create( dim );
}

/**
 * Create an {@link PlanarImg}<{@link FloatType}, {@link FloatArray}>.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< FloatType, FloatArray > floats( final long... dim )
{
  return ( PlanarImg< FloatType, FloatArray > ) new PlanarImgFactory<>( new FloatType() ).create( dim );
}

/**
 * Create an {@link PlanarImg}<{@link UnsignedByteType}, {@link ByteArray}>.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< UnsignedByteType, ByteArray > unsignedBytes( final long... dim )
{
  return ( PlanarImg< UnsignedByteType, ByteArray > ) new PlanarImgFactory<>( new UnsignedByteType() ).create( dim );
}

/**
 * Create an {@link PlanarImg}<{@link UnsignedShortType}, {@link ShortArray}
 * >.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< UnsignedShortType, ShortArray > unsignedShorts( final long... dim )
{
  return ( PlanarImg< UnsignedShortType, ShortArray > ) new PlanarImgFactory<>( new UnsignedShortType() ).create( dim );
}

/**
 * Create an {@link PlanarImg}<{@link NativeBoolType}, {@link BooleanArray}>.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< NativeBoolType, BooleanArray > booleans( final long... dim )
{
  return ( PlanarImg< NativeBoolType, BooleanArray > ) new PlanarImgFactory<>( new NativeBoolType() ).create( dim );
}

/**
 * Create an {@link PlanarImg}<{@link ComplexFloatType}, {@link FloatArray}
 * >.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< ComplexFloatType, FloatArray > complexFloats( final long... dim )
{
  return ( PlanarImg< ComplexFloatType, FloatArray > ) new PlanarImgFactory<>( new ComplexFloatType() ).create( dim );
}

/**
 * Create an {@link PlanarImg}<{@link ByteType}, {@link ByteArray}>.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< ByteType, ByteArray > bytes( final long... dim )
{
  return ( PlanarImg< ByteType, ByteArray > ) new PlanarImgFactory<>( new ByteType() ).create( dim );
}

/**
 * Create an {@link PlanarImg}<{@link UnsignedIntType}, {@link IntArray}>.
 */
@SuppressWarnings( "unchecked" )
final static public PlanarImg< UnsignedIntType, IntArray > unsignedInts( final long... dim )
{
  return ( PlanarImg< UnsignedIntType, IntArray > ) new PlanarImgFactory<>( new UnsignedIntType() ).create( dim );
}

private ImgPlus<UnsignedByteType> splitColorChannels(ImgPlus<ARGBType> input) {
  Img<ARGBType> colored = input.getImg();
  RandomAccessibleInterval<UnsignedByteType> colorStack = Views.stack(
      Converters.argbChannel( colored, 1 ),
      Converters.argbChannel( colored, 2 ),
      Converters.argbChannel( colored, 3 ) );
  ImgPlus<UnsignedByteType> result = new ImgPlus<>(ImgView.wrap(colorStack, new PlanarImgFactory<>()), input.getName());
  int lastAxis = colored.numDimensions();
  for (int i = 0; i < lastAxis; i++) result.setAxis(input.axis(i).copy(), i);
  result.setAxis(new DefaultLinearAxis(Axes.CHANNEL), lastAxis);
  return ImgPlusViews.moveAxis(result, lastAxis, 2);
}

@Test
public void testCopyToPlanarContainerWithSourceIteration()
{
  final PlanarImg< IntType, ? > planarImg = new PlanarImgFactory<>( new IntType() ).create( dimensions );
  copyWithSourceIteration( intImg, planarImg );
  assertArrayEquals( intData, getImgAsInts( planarImg ) );
}

  @Test
  public void testCopyToPlanarContainerWithDestIteration()
  {
    final PlanarImg< IntType, ? > planarImg = new PlanarImgFactory<>( new IntType() ).create( dimensions );
    copyWithDestIteration( intImg, planarImg );
    assertArrayEquals( intData, getImgAsInts( planarImg ) );
  }
}