@Override public void convertMetadata(final String xml, final MetadataStore dest) throws ServiceException { omexmlService().convertMetadata(xml, dest); }
@Override public void convertMetadata(final MetadataRetrieve src, final MetadataStore dest) { omexmlService().convertMetadata(src, dest); }
public IMetadata convertXml(MetadataRetrieve retrieve) throws ServiceException { IMetadata xmlMeta = service.createOMEXMLMetadata(); xmlMeta.createRoot(); service.convertMetadata(retrieve, xmlMeta); return xmlMeta; }
} else { OMEXMLService service = getService(); service.convertMetadata((MetadataRetrieve) filledStore, userMetadataStore); } else { OMEXMLService service = getService(); service.convertMetadata((MetadataRetrieve) filledStore, userMetadataStore);
} else { OMEXMLService service = getService(); service.convertMetadata((MetadataRetrieve) filledStore, userMetadataStore); } else { OMEXMLService service = getService(); service.convertMetadata((MetadataRetrieve) filledStore, userMetadataStore);
private int populateSPW(MetadataStore store, int screens, int plates, int rows, int cols, int fields, int acqs, boolean withMicrobeam) { final XMLMockObjects xml = new XMLMockObjects(); OME ome = null; if (screens==0) { ome = xml.createPopulatedPlate(plates, rows, cols, fields, acqs, withMicrobeam); } else { ome = xml.createPopulatedScreen(screens, plates, rows, cols, fields, acqs, withMicrobeam); } if (withMicrobeam) roiCount = roiCount + plates;; getOmeXmlMetadata().setRoot(new OMEXMLMetadataRoot(ome)); // copy populated SPW metadata into destination MetadataStore getOmeXmlService().convertMetadata(omeXmlMetadata, store); domains = new String[] {FormatTools.HCS_DOMAIN}; return ome.sizeOfImageList(); }
private int populateSPW(MetadataStore store, int screens, int plates, int rows, int cols, int fields, int acqs, boolean withMicrobeam) { final XMLMockObjects xml = new XMLMockObjects(); OME ome = null; if (screens==0) { ome = xml.createPopulatedPlate(plates, rows, cols, fields, acqs, withMicrobeam); } else { ome = xml.createPopulatedScreen(screens, plates, rows, cols, fields, acqs, withMicrobeam); } if (withMicrobeam) roiCount = roiCount + plates;; getOmeXmlMetadata().setRoot(new OMEXMLMetadataRoot(ome)); // copy populated SPW metadata into destination MetadataStore getOmeXmlService().convertMetadata(omeXmlMetadata, store); domains = new String[] {FormatTools.HCS_DOMAIN}; return ome.sizeOfImageList(); }
service.convertMetadata(ome_meta_data, metadataStore);
service.convertMetadata(ome_meta_data, metadataStore);
service.convertMetadata(omexmlMeta, store); MetadataTools.populatePixels(store, this, false, false);
service.convertMetadata(omexmlMeta, store); MetadataTools.populatePixels(store, this, false, false);
service.convertMetadata(meta, metadataStore); MetadataTools.populatePixels(metadataStore, this); service.convertMetadata(meta, metadataStore);
service.convertMetadata(meta, metadataStore); MetadataTools.populatePixels(metadataStore, this); service.convertMetadata(meta, metadataStore);