for (int series=0; series<getSeriesCount(); series++) { store.setPixelsPhysicalSizeX(FormatTools.createLength(size, UNITS.MICROMETER), series); for (int series=0; series<getSeriesCount(); series++) { store.setPixelsPhysicalSizeY(FormatTools.createLength(size, UNITS.MICROMETER), series); for (int series=0; series<getSeriesCount(); series++) { store.setPixelsPhysicalSizeZ(zStep, series);
for (int series=0; series<getSeriesCount(); series++) { store.setPixelsPhysicalSizeX(FormatTools.createLength(size, UNITS.MICROMETER), series); for (int series=0; series<getSeriesCount(); series++) { store.setPixelsPhysicalSizeY(FormatTools.createLength(size, UNITS.MICROMETER), series); for (int series=0; series<getSeriesCount(); series++) { store.setPixelsPhysicalSizeZ(zStep, series);
case 'M': if (dimension.start > prevM) { if (!extraDimOrder.contains('M') && mosaics <= getSeriesCount() && (prestitched == null || !prestitched || !allowAutostitching())) p / (getImageCount() * (getSeriesCount() / angles));
case 'M': if (dimension.start > prevM) { if (!extraDimOrder.contains('M') && mosaics <= getSeriesCount() && (prestitched == null || !prestitched || !allowAutostitching())) p / (getImageCount() * (getSeriesCount() / angles));
for (int image=0; image<getSeriesCount(); image++) { for (int c=0; c<getEffectiveSizeC(); c++) { store.setDetectorSettingsID(id, image, c);
for (int image=0; image<getSeriesCount(); image++) { for (int c=0; c<getEffectiveSizeC(); c++) { store.setDetectorSettingsID(id, image, c);
indexIntoPlanes.put(c, indices); int nameWidth = String.valueOf(getSeriesCount()).length(); for (DimensionEntry dimension : p.directoryEntry.dimensionEntries) { if (dimension == null) { int indexLength = String.valueOf(getSeriesCount()).length(); for (int i=0; i<getSeriesCount(); i++) { store.setImageInstrumentRef(MetadataTools.createLSID("Instrument", 0), i); if (acquiredDate != null) { int extraIndex = i - (getSeriesCount() - extraImages.size()); if (extraIndex < 0) { if (hasFlattenedResolutions()) {
indexIntoPlanes.put(c, indices); int nameWidth = String.valueOf(getSeriesCount()).length(); for (DimensionEntry dimension : p.directoryEntry.dimensionEntries) { if (dimension == null) { int indexLength = String.valueOf(getSeriesCount()).length(); for (int i=0; i<getSeriesCount(); i++) { store.setImageInstrumentRef(MetadataTools.createLSID("Instrument", 0), i); if (acquiredDate != null) { int extraIndex = i - (getSeriesCount() - extraImages.size()); if (extraIndex < 0) { if (hasFlattenedResolutions()) {
store.setROIDescription(getFirstNodeValue(layer, "Usage"), roiCount); for (int series=0; series<getSeriesCount(); series++) { store.setImageROIRef(roiID, series, roiCount);
store.setROIDescription(getFirstNodeValue(layer, "Usage"), roiCount); for (int series=0; series<getSeriesCount(); series++) { store.setImageROIRef(roiID, series, roiCount);