if (handler != null) { ArrayList<String> posNames = handler.getPositionNames(); int nameWidth = String.valueOf(getSeriesCount()).length(); for (int i=0; i<getSeriesCount(); i++) { String seriesSuffix = String.format("(series %0" + nameWidth + "d)", i + 1); String suffix = (i < posNames.size() && !posNames.get(i).equals("")) ? for (int i=0; i<getSeriesCount(); i++) { for (int i=0; i<getSeriesCount(); i++) { double sizeX = handler.getPixelSizeX(); double sizeY = handler.getPixelSizeY(); for (int i=0; i<getSeriesCount(); i++) { if (tsT.size() > 0) { setSeries(i); int[] coords = getZCTCoords(n); int stampIndex = getIndex(coords[0], split ? 0 : coords[1], 0); stampIndex += (coords[2] * getSeriesCount() + i) * zcPlanes; if (tsT.size() == getImageCount()) stampIndex = n; else if (tsT.size() == getSizeZ()) { if (exposureTime.size() >= getSizeC() && exposureTime.size() < getSizeC() * getSeriesCount()) { index = coords[1]; int[] coords = getZCTCoords(n); int index = coords[0]; index += (coords[2] * getSeriesCount() + i) * zcPlanes;
if (handler != null) { ArrayList<String> posNames = handler.getPositionNames(); int nameWidth = String.valueOf(getSeriesCount()).length(); for (int i=0; i<getSeriesCount(); i++) { String seriesSuffix = String.format("(series %0" + nameWidth + "d)", i + 1); String suffix = (i < posNames.size() && !posNames.get(i).equals("")) ? for (int i=0; i<getSeriesCount(); i++) { for (int i=0; i<getSeriesCount(); i++) { double sizeX = handler.getPixelSizeX(); double sizeY = handler.getPixelSizeY(); for (int i=0; i<getSeriesCount(); i++) { if (tsT.size() > 0) { setSeries(i); int[] coords = getZCTCoords(n); int stampIndex = getIndex(coords[0], split ? 0 : coords[1], 0); stampIndex += (coords[2] * getSeriesCount() + i) * zcPlanes; if (tsT.size() == getImageCount()) stampIndex = n; else if (tsT.size() == getSizeZ()) { if (exposureTime.size() >= getSizeC() && exposureTime.size() < getSizeC() * getSeriesCount()) { index = coords[1]; int[] coords = getZCTCoords(n); int index = coords[0]; index += (coords[2] * getSeriesCount() + i) * zcPlanes;
addGlobalMeta(key, globalMetadata.get(key)); if (key.equals("ChannelCount")) { for (int i=0; i<getSeriesCount(); i++) { CoreMetadata ms = core.get(i, 0); if (ms.sizeC == 0) { for (int i=0; i<getSeriesCount(); i++) { core.get(i, 0).sizeZ = 1; for (int i=0; i<getSeriesCount(); i++) { core.get(i, 0).sizeT = imageOffsets.size() / getSeriesCount(); for (int i=0; i<getSeriesCount(); i++) { core.get(i, 0).sizeT = 1; for (int i=0; i<getSeriesCount(); i++) { core.get(i, 0).sizeC = 1; if (positionCount != getSeriesCount() && (getSizeZ() == imageOffsets.size() || (extraZDataCount > 1 && getSizeZ() == 1 && (extraZDataCount == getSizeC())) || (handler.getXPositions().size() == 0 && (xOffset == 0 && getSizeZ() != getSeriesCount()))) && getSeriesCount() > 1) { CoreMetadata ms0 = core.get(0, 0); if (getSeriesCount() > ms0.sizeZ) { ms0.sizeZ = getSeriesCount(); if (getSizeT() == imageOffsets.size() && getSeriesCount() > 1) { CoreMetadata firstCore = core.get(0, 0); core = new CoreMetadataList(); for (int i=0; i<getSeriesCount(); i++) { CoreMetadata ms = core.get(i, 0);
addGlobalMeta(key, globalMetadata.get(key)); if (key.equals("ChannelCount")) { for (int i=0; i<getSeriesCount(); i++) { CoreMetadata ms = core.get(i, 0); if (ms.sizeC == 0) { for (int i=0; i<getSeriesCount(); i++) { core.get(i, 0).sizeZ = 1; for (int i=0; i<getSeriesCount(); i++) { core.get(i, 0).sizeT = imageOffsets.size() / getSeriesCount(); for (int i=0; i<getSeriesCount(); i++) { core.get(i, 0).sizeT = 1; for (int i=0; i<getSeriesCount(); i++) { core.get(i, 0).sizeC = 1; if (positionCount != getSeriesCount() && (getSizeZ() == imageOffsets.size() || (extraZDataCount > 1 && getSizeZ() == 1 && (extraZDataCount == getSizeC())) || (handler.getXPositions().size() == 0 && (xOffset == 0 && getSizeZ() != getSeriesCount()))) && getSeriesCount() > 1) { CoreMetadata ms0 = core.get(0, 0); if (getSeriesCount() > ms0.sizeZ) { ms0.sizeZ = getSeriesCount(); if (getSizeT() == imageOffsets.size() && getSeriesCount() > 1) { CoreMetadata firstCore = core.get(0, 0); core = new CoreMetadataList(); for (int i=0; i<getSeriesCount(); i++) { CoreMetadata ms = core.get(i, 0);