private void readWavelength(int channel, MetadataStore store) throws FormatException, IOException { float min = in.readFloat(); float max = in.readFloat(); addGlobalMeta("Wavelength " + (channel + 1) + " min. intensity", min); addGlobalMeta("Wavelength " + (channel + 1) + " max. intensity", max); if (store instanceof IMinMaxStore) { ((IMinMaxStore) store).setChannelGlobalMinMax(channel, min, max, 0); } }
addGlobalMeta(prefix + " " + key, value); addGlobalMeta(key, value);
addGlobalMeta(prefix + " " + key, value); addGlobalMeta(key, value);
private void readWavelength(int channel, MetadataStore store) throws FormatException, IOException { float min = in.readFloat(); float max = in.readFloat(); addGlobalMeta("Wavelength " + (channel + 1) + " min. intensity", min); addGlobalMeta("Wavelength " + (channel + 1) + " max. intensity", max); if (store instanceof IMinMaxStore) { ((IMinMaxStore) store).setChannelGlobalMinMax(channel, min, max, 0); } }
addGlobalMeta("Sub-image starting point (X)", subImageStartX); addGlobalMeta("Sub-image starting point (Y)", subImageStartY); addGlobalMeta("Sub-image starting point (Z)", subImageStartZ); addGlobalMeta("Pixel sampling size (X)", pixelSamplingX); addGlobalMeta("Pixel sampling size (Y)", pixelSamplingY); addGlobalMeta("Pixel sampling size (Z)", pixelSamplingZ); addGlobalMeta("X element length (in um)", pixX); addGlobalMeta("Y element length (in um)", pixY); addGlobalMeta("Z element length (in um)", pixZ); addGlobalMeta("X axis angle", xAxisAngle); addGlobalMeta("Y axis angle", yAxisAngle); addGlobalMeta("Z axis angle", zAxisAngle); addGlobalMeta("Column axis sequence", xAxisSeq); addGlobalMeta("Row axis sequence", yAxisSeq); addGlobalMeta("Section axis sequence", zAxisSeq); addGlobalMeta("Image Type", imageType); addGlobalMeta("Lens ID Number", lensID); addGlobalMeta("X axis tilt angle", xTiltAngle); addGlobalMeta("Y axis tilt angle", yTiltAngle); addGlobalMeta("Z axis tilt angle", zTiltAngle); addGlobalMeta("Wavelength " + (i + 1) + " (in nm)", waves[i]); addGlobalMeta("X origin (in um)", xOrigin); addGlobalMeta("Y origin (in um)", yOrigin); addGlobalMeta("Z origin (in um)", zOrigin);
int index = getIndex(zz, cc, tt); for (int i=1; i<keys.length; i++) { addGlobalMeta("Plane " + index + " " + keys[i], values[i]); previousLine.endsWith("open OTF"))) addGlobalMeta(previousLine + " " + key, value); else addGlobalMeta(key, value);
addGlobalMeta("Sub-image starting point (X)", subImageStartX); addGlobalMeta("Sub-image starting point (Y)", subImageStartY); addGlobalMeta("Sub-image starting point (Z)", subImageStartZ); addGlobalMeta("Pixel sampling size (X)", pixelSamplingX); addGlobalMeta("Pixel sampling size (Y)", pixelSamplingY); addGlobalMeta("Pixel sampling size (Z)", pixelSamplingZ); addGlobalMeta("X element length (in um)", pixX); addGlobalMeta("Y element length (in um)", pixY); addGlobalMeta("Z element length (in um)", pixZ); addGlobalMeta("X axis angle", xAxisAngle); addGlobalMeta("Y axis angle", yAxisAngle); addGlobalMeta("Z axis angle", zAxisAngle); addGlobalMeta("Column axis sequence", xAxisSeq); addGlobalMeta("Row axis sequence", yAxisSeq); addGlobalMeta("Section axis sequence", zAxisSeq); addGlobalMeta("Image Type", imageType); addGlobalMeta("Lens ID Number", lensID); addGlobalMeta("X axis tilt angle", xTiltAngle); addGlobalMeta("Y axis tilt angle", yTiltAngle); addGlobalMeta("Z axis tilt angle", zTiltAngle); addGlobalMeta("Wavelength " + (i + 1) + " (in nm)", waves[i]); addGlobalMeta("X origin (in um)", xOrigin); addGlobalMeta("Y origin (in um)", yOrigin); addGlobalMeta("Z origin (in um)", zOrigin);
int index = getIndex(zz, cc, tt); for (int i=1; i<keys.length; i++) { addGlobalMeta("Plane " + index + " " + keys[i], values[i]); previousLine.endsWith("open OTF"))) addGlobalMeta(previousLine + " " + key, value); else addGlobalMeta(key, value);
addGlobalMeta("ImageWidth", sizeX); addGlobalMeta("ImageHeight", sizeY); addGlobalMeta("NumberOfImages", imageCount); addGlobalMeta("PixelType", pixel); addGlobalMeta("Number of timepoints", rawSizeT); addGlobalMeta("Image sequence", imageSequence); addGlobalMeta("Number of wavelengths", rawSizeC); addGlobalMeta("Number of focal planes", sizeZ);
addGlobalMeta("ImageWidth", sizeX); addGlobalMeta("ImageHeight", sizeY); addGlobalMeta("NumberOfImages", imageCount); addGlobalMeta("PixelType", pixel); addGlobalMeta("Number of timepoints", rawSizeT); addGlobalMeta("Image sequence", imageSequence); addGlobalMeta("Number of wavelengths", rawSizeC); addGlobalMeta("Number of focal planes", sizeZ);