ImageStack newstack = imp.createEmptyStack(); int xHeight=newstack.getHeight(); int yWidth=newstack.getWidth();
int totalheight = ip.getHeight(); ImageProcessor ip2; ImageStack stack2 = imp.createEmptyStack(); float[][][][] grad = new float[2][width][height][channels]; float[][][] G = new float[width][height][3]; // must be clean for each slice
int totalheight = ip.getHeight(); ImageProcessor ip2; ImageStack stack2 = imp.createEmptyStack(); float[][][][] grad = new float[2][width][height][channels]; float[][][] G = new float[width][height][3]; // must be clean for each slice
final ImageStack stack = img.getStack(); final int size = stack.getSize(); final ImageStack counterStack = img.createEmptyStack(); for (int i = 1; i <= size; i++) { ImageProcessor ip = stack.getProcessor(i);
Opener o = new Opener(); try{ stack = imp.createEmptyStack(); stack2 = imp.createEmptyStack(); stack2.addSlice("Kalman Filter",imp.getProcessor());
void convertToByte(ImagePlus imp) { ImageProcessor ip; int currentSlice = imp.getCurrentSlice(); ImageStack stack1 = imp.getStack(); ImageStack stack2 = imp.createEmptyStack(); int nSlices = imp.getStackSize(); String label; for(int i=1; i<=nSlices; i++) { label = stack1.getSliceLabel(i); ip = stack1.getProcessor(i); ip.setMinAndMax(0, 255); stack2.addSlice(label, ip.convertToByte(true)); } imp.setStack(null, stack2); imp.setSlice(currentSlice); imp.setCalibration(imp.getCalibration()); //update calibration }
void convertToByte(ImagePlus imp) { ImageProcessor ip; int currentSlice = imp.getCurrentSlice(); ImageStack stack1 = imp.getStack(); ImageStack stack2 = imp.createEmptyStack(); int nSlices = imp.getStackSize(); String label; for(int i=1; i<=nSlices; i++) { label = stack1.getSliceLabel(i); ip = stack1.getProcessor(i); ip.setMinAndMax(0, 255); stack2.addSlice(label, ip.convertToByte(true)); } imp.setStack(null, stack2); imp.setSlice(currentSlice); imp.setCalibration(imp.getCalibration()); //update calibration }
public void runLipschitz(ImageProcessor ip) { if (IJ.escapePressed()) return; breaked = false; Date d1, d2; d1 = new Date(); IJ.showStatus("Initializing..."); m_stack_out = m_imp.createEmptyStack(); ImagePlus imp2 = null; for(int i = 0; ((i < m_scount) && (!breaked)); i++) { if (m_scount >1) { ip = m_stack.getProcessor(i+1); } iptmp = ip.createProcessor(ImageWidth, ImageHeight); iptmp.copyBits(ip, 0, 0, Blitter.COPY); IJ.showStatus("Filtering "+ (i+1)+ "/"+m_scount +" slice."); Lipschitz2D(iptmp); m_stack_out.addSlice(m_imp.getShortTitle()+" "+(i+1)+"/"+m_scount, iptmp); if (breaked = IJ.escapePressed()) IJ.beep(); } imp2 = new ImagePlus(m_imp.getShortTitle()+" Filtered (Lipschitz) Slope:"+m_Slope+" "+((m_Down)?" -Down":" ")+" "+((m_TopHat)?" -TopHat":" ")+((breaked)?" -INTERUPTED":""), m_stack_out); imp2.show(); imp2.updateAndDraw(); IJ.showProgress(1.0); } // end of 'runLipschitz' method
public void runLipschitz(ImageProcessor ip) { if (IJ.escapePressed()) return; breaked = false; Date d1, d2; d1 = new Date(); IJ.showStatus("Initializing..."); m_stack_out = m_imp.createEmptyStack(); ImagePlus imp2 = null; for(int i = 0; ((i < m_scount) && (!breaked)); i++) { if (m_scount >1) { ip = m_stack.getProcessor(i+1); } iptmp = ip.createProcessor(ImageWidth, ImageHeight); iptmp.copyBits(ip, 0, 0, Blitter.COPY); IJ.showStatus("Filtering "+ (i+1)+ "/"+m_scount +" slice."); Lipschitz2D(iptmp); m_stack_out.addSlice(m_imp.getShortTitle()+" "+(i+1)+"/"+m_scount, iptmp); if (breaked = IJ.escapePressed()) IJ.beep(); } imp2 = new ImagePlus(m_imp.getShortTitle()+" Filtered (Lipschitz) Slope:"+m_Slope+" "+((m_Down)?" -Down":" ")+" "+((m_TopHat)?" -TopHat":" ")+((breaked)?" -INTERUPTED":""), m_stack_out); imp2.show(); imp2.updateAndDraw(); IJ.showProgress(1.0); } // end of 'runLipschitz' method
ImageStack s; if (stack==null) { s = createEmptyStack(); ImageProcessor ip2 = getProcessor(); if (ip2==null)
ImageStack s; if (stack==null) { s = createEmptyStack(); ImageProcessor ip2 = getProcessor(); if (ip2==null)
ImageStack stack = imp.createEmptyStack(); int inc = nSlices/40; if (inc<1) inc = 1;
ImageStack stack = imp.createEmptyStack(); int inc = nSlices/40; if (inc<1) inc = 1;
else { if (stack==null) stack = imp.createEmptyStack(); try { ImageStack stack2 = imp.getStack();
else { if (stack==null) stack = imp.createEmptyStack(); try { ImageStack stack2 = imp.getStack();
int height = stack1.getHeight(); int n = stack1.getSize(); ImageStack stack2 = img1.createEmptyStack(); try { for (int i=1; i<=n; i++) {
int height = stack1.getHeight(); int n = stack1.getSize(); ImageStack stack2 = img1.createEmptyStack(); try { for (int i=1; i<=n; i++) {
int height = stack1.getHeight(); int n = stack1.getSize(); ImageStack stack2 = img1.createEmptyStack(); try { for (int i=1; i<=n; i++) {