variantContextComparator = fileHeader.getVCFRecordComparator(); } else { if (!variantContextComparator.isCompatible(fileHeader.getContigLines())) { throw new IllegalArgumentException( "The contig entries in input file " + file.getAbsolutePath() + " are not compatible with the others.");
variantContextComparator = fileHeader.getVCFRecordComparator(); } else { if (!variantContextComparator.isCompatible(fileHeader.getContigLines())) { throw new IllegalArgumentException( "The contig entries in input file " + file.getAbsolutePath() + " are not compatible with the others.");