@Test public void testFromString2() { GenotypeLikelihoods gl = GenotypeLikelihoods.fromGLField(vGLString); assertDoubleArraysAreEqual(gl.getAsVector(), v); Assert.assertEquals(gl.getAsString(), vPLString); }
GenotypeLikelihoods glField = GenotypeLikelihoods.fromGLField((String) value); double[] glv = glField.getAsVector(); lhList = new ArrayList<>(glv.length);
gb.PL(decodeInts(genotypeValues.get(i))); } else if (gtKey.equals(VCFConstants.GENOTYPE_LIKELIHOODS_KEY)) { gb.PL(GenotypeLikelihoods.fromGLField(genotypeValues.get(i)).getAsPLs()); GenotypeLikelihoods glField = GenotypeLikelihoods.fromGLField(genotypeValues.get(i)); gb.PL(glField.getAsPLs()); gb.attribute(gtKey, genotypeValues.get(i));
gb.PL(GenotypeLikelihoods.fromGLField(genotypeValues.get(i)).getAsPLs());
gb.PL(GenotypeLikelihoods.fromGLField(genotypeValues.get(i)).getAsPLs());
gb.PL(decodeInts(genotypeValues.get(i))); } else if (gtKey.equals(VCFConstants.GENOTYPE_LIKELIHOODS_KEY)) { gb.PL(GenotypeLikelihoods.fromGLField(genotypeValues.get(i)).getAsPLs()); } else if (gtKey.equals(VCFConstants.DEPTH_KEY)) { gb.DP(Integer.valueOf(genotypeValues.get(i)));
gb.PL(decodeInts(GTValueArray[i])); } else if (gtKey.equals(VCFConstants.GENOTYPE_LIKELIHOODS_KEY)) { gb.PL(GenotypeLikelihoods.fromGLField(GTValueArray[i]).getAsPLs()); } else if (gtKey.equals(VCFConstants.DEPTH_KEY)) { gb.DP(Integer.valueOf(GTValueArray[i]));