private boolean validateMateCigar(final SAMRecord record, final long recordNumber) { return validateCigar(record, recordNumber, false); }
private boolean validateMateCigar(final SAMRecord record, final long recordNumber) { return validateCigar(record, recordNumber, false); }
private boolean validateMateCigar(final SAMRecord record, final long recordNumber) { return validateCigar(record, recordNumber, false); }
private boolean validateCigar(final SAMRecord record, final long recordNumber) { if (record.getReadUnmappedFlag()) { return true; } return validateCigar(record, recordNumber, true); }
private boolean validateCigar(final SAMRecord record, final long recordNumber) { return record.getReadUnmappedFlag() || validateCigar(record, recordNumber, true); }
private boolean validateCigar(final SAMRecord record, final long recordNumber) { return record.getReadUnmappedFlag() || validateCigar(record, recordNumber, true); }
final boolean hasValidSortOrder = validateSortOrder(record, recordNumber); validateReadGroup(record, header); final boolean cigarIsValid = validateCigar(record, recordNumber); if (cigarIsValid) { try {
validateSortOrder(record, recordNumber); validateReadGroup(record, header); final boolean cigarIsValid = validateCigar(record, recordNumber); if (cigarIsValid) { validateNmTag(record, recordNumber);
final boolean hasValidSortOrder = validateSortOrder(record, recordNumber); validateReadGroup(record, header); final boolean cigarIsValid = validateCigar(record, recordNumber); if (cigarIsValid) { try {