/** * Finalizes writing and closes the file. * @return count of records with no coordinates. */ public long finish() { final BAMIndexContent content = indexBuilder.processReference(referenceIndex); outputWriter.writeReference(content); outputWriter.close(); return indexBuilder.getNoCoordinateRecordCount(); }
/** * Finalizes writing and closes the file. * @return count of records with no coordinates. */ public long finish() { final BAMIndexContent content = indexBuilder.processReference(referenceIndex); outputWriter.writeReference(content); outputWriter.close(); return indexBuilder.getNoCoordinateRecordCount(); }