@Contains(values = { "unsorted", "queryname", "coordinate" }) @InputArgument private String sortOrder;
@Contains(values = { "unsorted", "queryname", "coordinate" }) @InputArgument private String sortOrder;
@Contains(values = { "unsorted", "queryname", "coordinate" }) @InputArgument private String sortOrder;
@Contains(values = { "unsorted", "queryname", "coordinate" }) @InputArgument(description = "The sorted BAM or SAM output file.") private String sortOrder;
@Contains(values = { "unsorted", "queryname", "coordinate" }) @InputArgument private String sortOrder;
@Contains(values = { "unsorted", "queryname", "coordinate" }) @InputArgument private String sortOrder;
@Contains(values = { "unsorted", "queryname", "coordinate" }) @InputArgument(description = "The sorted BAM or SAM output file.") private String sortOrder;
@Contains(message = "Invalid aligner", values = { "bfast", "bwa" }, groups = InputValidations.class) @InputArgument(flag = "-a") private String aligner; @Contains(message = "Invalid sequencer", values = { "Solexa 1G Genome Analyzer", "Illumina Genome Analyzer", "Illumina Genome Analyzer II", "Illumina Genome Analyzer IIx", "Illumina HiSeq 2000", "Illumina HiScan SQ", "Illumina HiSeq 1000", "AB SOLiD System", "AB SOLiD System 2.0", "AB SOLiD System 3.0",
@Contains(values = { "unsorted", "queryname", "coordinate" }) @InputArgument private String sortOrder;