public psidev.psi.mi.jami.model.Publication createPublicationById( String identifier, String source ) throws BridgeFailedException { psidev.psi.mi.jami.model.Publication p = new ImexPublication(new Publication()); p.getIdentifiers().add(XrefUtils.createIdentityXref(source, identifier)); allPublications.add( p ); return p; }
public Publication createPublicationById( String identifier ) throws ImexCentralException { Publication p = new Publication(); final Identifier i = new Identifier(); i.setAc( identifier ); i.setNs("pmid"); p.getIdentifier().add(i); p.setImexAccession( "N/A" ); allPublications.add( p ); return p; }
public void addPublication( String identifier, String imexAccession, String status, String owner ) { Publication p = new Publication(); final Identifier id = new Identifier(); id.setAc( identifier ); p.getIdentifier().add(id); p.setImexAccession( ( imexAccession == null ? "N/A" : imexAccession ) ); p.setStatus( status ); p.setOwner( owner ); allPublications.add( p ); }
public void addPublication( String identifier, String imexAccession, String status, String owner ) { Publication p = new Publication(); final Identifier id = new Identifier(); id.setAc( identifier ); p.getIdentifier().add(id); p.setImexAccession( ( imexAccession == null ? "N/A" : imexAccession ) ); p.setStatus( status ); p.setOwner( owner ); allPublications.add( new ImexPublication(p)); }
public void createPublication( psidev.psi.mi.jami.model.Publication publication ) throws BridgeFailedException { if (publication != null){ try { Publication pub = new Publication(); pub.setTitle(publication.getTitle()); pub.setImexAccession(publication.getImexId());