public Parameter( CvParameterType cvParameterType, CvParameterUnit cvParameterUnit, Double factor ) { super(); setFactor(factor); setCvParameterType(cvParameterType); setCvParameterUnit(cvParameterUnit); }
@Deprecated public Parameter( Institution owner, CvParameterType cvParameterType, Double factor ) { this(cvParameterType, factor); setOwner(owner); }
public Parameter( CvParameterType cvParameterType, Double factor ) { super(); setFactor(factor); setCvParameterType(cvParameterType); }
if (param.getCvParameterType() != null && param.getCvParameterType().getShortLabel() != null){ db= param.getCvParameterType().getShortLabel(); if (param.getFactor() != null && param.getFactor() != 0){ value.append(param.getFactor()).append("x"); if (param.getBase() != null && param.getBase() != 0){ value.append(param.getBase()); if (param.getExponent() != null && param.getExponent() != 0){ value.append("^").append(param.getExponent()); if (param.getUncertainty() != null && param.getUncertainty() != 0){ value.append(" ~").append(param.getUncertainty()); if (param.getCvParameterUnit() != null && param.getCvParameterUnit().getShortLabel() != null){ mitabParameter.setUnit(param.getCvParameterUnit().getShortLabel());
parameter.setOwner(getInstitution()); parameter.setCvParameterType(cvParameterType); parameter.setFactor(factor); parameter.setCvParameterUnit(cvParameterUnit); parameter.setBase(base); parameter.setExponent(exponent); parameter.setUncertainty(uncertainty); parameter.setExperiment(experiment);
protected void traverseParameter(Parameter parameter, IntactVisitor... visitors) { if (parameter == null) return; for (IntactVisitor visitor : visitors) { visitor.visitParameter(parameter); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(parameter)) { return; } traverse(parameter.getCvParameterType(), visitors); traverse(parameter.getCvParameterUnit(), visitors); }
@Override public boolean equals(Object obj) { if (this == obj) return true; if (!super.equals(obj)) return false; if (getClass() != obj.getClass()) return false; final InteractionParameter other = (InteractionParameter) obj; if (interaction == null) { if (other.interaction != null) return false; } else if (!interaction.equals(other.interaction, false)) return false; return true; } }
public psidev.psi.mi.xml.model.Parameter intactToPsi( T intactObject ) { psidev.psi.mi.xml.model.Parameter parameter = new psidev.psi.mi.xml.model.Parameter(intactObject.getCvParameterType().getShortLabel(), intactObject.getFactor()); intactStartConversation(parameter); parameter.setTermAc(intactObject.getCvParameterType().getIdentifier()); if (intactObject.getBase() != null) { parameter.setBase(intactObject.getBase()); } if (intactObject.getBase() != null) { parameter.setBase(intactObject.getBase()); } if (intactObject.getExponent() != null) { parameter.setExponent(intactObject.getExponent()); } if (intactObject.getUncertainty() != null) { parameter.setUncertainty(intactObject.getUncertainty()); } if (intactObject.getCvParameterUnit() != null) { parameter.setUnit(intactObject.getCvParameterUnit().getShortLabel()); parameter.setUnitAc(intactObject.getCvParameterUnit().getIdentifier()); } if(intactObject.getExperiment() != null) { parameter.setExperimentRef(new ExperimentRef(experimentConverter.intactToPsi(intactObject.getExperiment()).getId())); } intactEndConversion(intactObject); return parameter; }
protected void traverseParameter(Parameter parameter, IntactVisitor... visitors) { if (parameter == null) return; for (IntactVisitor visitor : visitors) { visitor.visitParameter(parameter); } // check if this element has been traversed already, to avoid cyclic recursion if (recursionChecker.isAlreadyTraversed(parameter)) { return; } traverse(parameter.getCvParameterType(), visitors); traverse(parameter.getCvParameterUnit(), visitors); }
public Parameter( CvParameterType cvParameterType, Double factor ) { super(); setFactor(factor); setCvParameterType(cvParameterType); }
@Override public boolean equals(Object obj) { if (this == obj) return true; if (!super.equals(obj)) return false; if (getClass() != obj.getClass()) return false; final InteractionParameter other = (InteractionParameter) obj; if (interaction == null) { if (other.interaction != null) return false; } else if (!interaction.equals(other.interaction, false)) return false; return true; } }
public Parameter( CvParameterType cvParameterType, CvParameterUnit cvParameterUnit, Double factor ) { super(); setFactor(factor); setCvParameterType(cvParameterType); setCvParameterUnit(cvParameterUnit); }
@Deprecated public Parameter( Institution owner, CvParameterType cvParameterType, CvParameterUnit cvParameterUnit, Double factor ) { this(cvParameterType, cvParameterUnit, factor); setOwner(owner); }
public boolean equals(Object obj, boolean checkComponents) { if (this == obj) return true; if (!super.equals(obj)) return false; if (getClass() != obj.getClass()) return false; final ComponentParameter other = (ComponentParameter) obj; if (checkComponents){ if (component == null) { if (other.component != null) return false; } else if (!component.equals(other.component)) return false; } return true; } }
@Deprecated public Parameter( Institution owner, CvParameterType cvParameterType, Double factor ) { this(cvParameterType, factor); setOwner(owner); }
public boolean equals(Object obj, boolean checkComponents) { if (this == obj) return true; if (!super.equals(obj)) return false; if (getClass() != obj.getClass()) return false; final ComponentParameter other = (ComponentParameter) obj; if (checkComponents){ if (component == null) { if (other.component != null) return false; } else if (!component.equals(other.component)) return false; } return true; } }
@Deprecated public Parameter( Institution owner, CvParameterType cvParameterType, CvParameterUnit cvParameterUnit, Double factor ) { this(cvParameterType, cvParameterUnit, factor); setOwner(owner); }